Metadata-Version: 2.1
Name: ncem
Version: 0.1.0
Summary: ncem. A cookietemple based .
Home-page: https://github.com/theislab/ncem
License: BSD
Author: Anna C. Schaar
Author-email: anna.schaar@helmholtz-muenchen.de
Requires-Python: >=3.7,<3.10
Classifier: License :: Other/Proprietary License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Requires-Dist: Jinja2 (>=2.11.3,<3.0.0)
Requires-Dist: PyYAML (>=5.4.1,<6.0.0)
Requires-Dist: click (>=7.1.2,<8.0.0)
Requires-Dist: diffxpy (>=0.7.4,<0.8.0)
Requires-Dist: louvain (>=0.7.0,<0.8.0)
Requires-Dist: matplotlib (>=3.4.2,<4.0.0)
Requires-Dist: patsy (>=0.5.1,<0.6.0)
Requires-Dist: rich (>=10.1.0,<11.0.0)
Requires-Dist: scanpy (>=1.7.2,<2.0.0)
Requires-Dist: scipy (>=1.6.3,<2.0.0)
Requires-Dist: seaborn (>=0.11.1,<0.12.0)
Requires-Dist: squidpy (>=1.0.0,<2.0.0)
Requires-Dist: tensorflow (>=2.5.0,<3.0.0)
Project-URL: Documentation, https://ncem.readthedocs.io
Project-URL: Repository, https://github.com/theislab/ncem
Description-Content-Type: text/x-rst

ncem
===========================

|PyPI| |Python Version| |License| |Read the Docs| |Build| |Tests| |Codecov| |pre-commit| |Black|

.. |PyPI| image:: https://img.shields.io/pypi/v/ncem.svg
   :target: https://pypi.org/project/ncem/
   :alt: PyPI
.. |Python Version| image:: https://img.shields.io/pypi/pyversions/ncem
   :target: https://pypi.org/project/ncem
   :alt: Python Version
.. |License| image:: https://img.shields.io/github/license/theislab/ncem
   :target: https://opensource.org/licenses/BSD-3-Clause
   :alt: License
.. |Read the Docs| image:: https://img.shields.io/readthedocs/ncem/latest.svg?label=Read%20the%20Docs
   :target: https://ncem.readthedocs.io/
   :alt: Read the documentation at https://ncem.readthedocs.io/
.. |Build| image:: https://github.com/theislab/ncem/workflows/Build%20ncem%20Package/badge.svg
   :target: https://github.com/theislab/ncem/actions?workflow=Package
   :alt: Build Package Status
.. |Tests| image:: https://github.com/theislab/ncem/workflows/Run%20ncem%20Tests/badge.svg
   :target: https://github.com/theislab/ncem/actions?workflow=Tests
   :alt: Run Tests Status
.. |Codecov| image:: https://codecov.io/gh/theislab/ncem/branch/master/graph/badge.svg
   :target: https://codecov.io/gh/theislab/ncem
   :alt: Codecov
.. |pre-commit| image:: https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit&logoColor=white
   :target: https://github.com/pre-commit/pre-commit
   :alt: pre-commit
.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
   :target: https://github.com/psf/black
   :alt: Black


Features
--------

Repository for the manuscript *Fischer, D. S., Schaar, A. C. and Theis, F. Learning cell communication from spatial graphs of cells. 2021.*


Installation
------------

You can install *ncem* via pip_ from PyPI_:

.. code:: console

   $ pip install ncem


Usage
-----

Please see the `Command-line Reference <Usage_>`_ for details.


Credits
-------

This package was created with cookietemple_ using Cookiecutter_ based on Hypermodern_Python_Cookiecutter_.

.. _cookietemple: https://cookietemple.com
.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _PyPI: https://pypi.org/
.. _Hypermodern_Python_Cookiecutter: https://github.com/cjolowicz/cookiecutter-hypermodern-python
.. _pip: https://pip.pypa.io/
.. _Usage: https://ncem.readthedocs.io/en/latest/usage.html

