.coveragerc
.gitignore
.readthedocs.yml
AUTHORS.rst
CHANGELOG.rst
LICENSE.txt
README.rst
pyproject.toml
setup.cfg
setup.py
tox.ini
.github/workflows/python-publish.yml
data/Run_98_53_11_1/trajectory.h5
data/Run_98_53_11_1/Results/avg_concentration.csv
data/Run_98_53_11_1/Results/biomass.csv
data/Run_98_53_11_1/Results/ntypes.csv
docs/Makefile
docs/analysis.rst
docs/atom_generation.rst
docs/authors.rst
docs/changelog.rst
docs/conf.py
docs/datafed.rst
docs/examples.rst
docs/index.rst
docs/license.rst
docs/readme.rst
docs/requirements.txt
docs/_static/.gitignore
examples/test.py
notebooks/Untitled.ipynb
notebooks/test.py
runs/atom_4_64_11_1.in
runs/run_4_64_11.pkl
src/nufeb_tools/__init__.py
src/nufeb_tools/__version__.py
src/nufeb_tools/allclean.py
src/nufeb_tools/datafed.py
src/nufeb_tools/generate_atom.py
src/nufeb_tools/generate_atom_dev.py
src/nufeb_tools/playbook.yml
src/nufeb_tools/plot.py
src/nufeb_tools/test.py
src/nufeb_tools/utils.py
src/nufeb_tools/whole_culture_growth_curves.py
src/nufeb_tools.egg-info/PKG-INFO
src/nufeb_tools.egg-info/SOURCES.txt
src/nufeb_tools.egg-info/dependency_links.txt
src/nufeb_tools.egg-info/entry_points.txt
src/nufeb_tools.egg-info/not-zip-safe
src/nufeb_tools.egg-info/requires.txt
src/nufeb_tools.egg-info/top_level.txt
src/nufeb_tools/templates/Bacillus.txt
src/nufeb_tools/templates/Inputscript.txt
src/nufeb_tools/templates/Slurm.txt
src/nufeb_tools/templates/local.txt
tests/conftest.py
tests/test_nufeb_tools.py