CITATION.cff
LICENSE
MANIFEST.in
NOTICE
README.md
pyproject.toml
setup.py
bin/install-nplinker-deps
src/nplinker/__init__.py
src/nplinker/aa_pred.py
src/nplinker/aalist.py
src/nplinker/annotations.py
src/nplinker/config.py
src/nplinker/genomics.py
src/nplinker/genomics_utilities.py
src/nplinker/loader.py
src/nplinker/logconfig.py
src/nplinker/metabolomics.py
src/nplinker/nplinker.py
src/nplinker/pickler.py
src/nplinker/process_output.py
src/nplinker/spec_clustering.py
src/nplinker/strains.py
src/nplinker/utils.py
src/nplinker.egg-info/PKG-INFO
src/nplinker.egg-info/SOURCES.txt
src/nplinker.egg-info/dependency_links.txt
src/nplinker.egg-info/requires.txt
src/nplinker.egg-info/top_level.txt
src/nplinker/class_info/__init__.py
src/nplinker/class_info/chem_classes.py
src/nplinker/class_info/class_matches.py
src/nplinker/class_info/runcanopus.py
src/nplinker/data/MIBiG2.0_compounds_with_AS_BGC_CF_NPC_classes.txt
src/nplinker/data/matched_mibig_gnps_update.csv
src/nplinker/data/matched_mibig_gnps_update.mgf
src/nplinker/data/nplinker.toml
src/nplinker/data/strain_id_mapping.csv
src/nplinker/pairedomics/__init__.py
src/nplinker/pairedomics/downloader.py
src/nplinker/pairedomics/runbigscape.py
src/nplinker/parsers/__init__.py
src/nplinker/parsers/kcb.py
src/nplinker/parsers/mgf.py
src/nplinker/scoring/IOKR.py
src/nplinker/scoring/__init__.py
src/nplinker/scoring/data_linking.py
src/nplinker/scoring/data_linking_functions.py
src/nplinker/scoring/methods.py
src/nplinker/scoring/misc.py
src/nplinker/scoring/iokr/__init__.py
src/nplinker/scoring/iokr/build_input_matrix.py
src/nplinker/scoring/iokr/build_test_matrix.py
src/nplinker/scoring/iokr/formula.py
src/nplinker/scoring/iokr/iokr.py
src/nplinker/scoring/iokr/iokr_opt.py
src/nplinker/scoring/iokr/iokrdata.py
src/nplinker/scoring/iokr/mk_fprints.py
src/nplinker/scoring/iokr/nplinker_iokr.py
src/nplinker/scoring/iokr/run_iokr.py
src/nplinker/scoring/iokr/run_iokr_novel.py
src/nplinker/scoring/iokr/spectrum.py
src/nplinker/scoring/iokr/spectrum_filters.py
src/nplinker/scoring/rosetta/__init__.py
src/nplinker/scoring/rosetta/rosetta.py
src/nplinker/scoring/rosetta/rosetta_functions.py
src/nplinker/scoring/rosetta/spec_lib.py