.coveragerc
.git-blame-ignore-revs
.gitignore
.readthedocs.yaml
CHANGELOG.md
LICENSE
README.md
pyproject.toml
requirements.txt
setup.cfg
setup.py
.github/workflows/black.yml
.github/workflows/flake8.yml
.github/workflows/python_publish.yml
.github/workflows/tests.yml
docs/Makefile
docs/conf.py
docs/index.rst
docs/make.bat
docs/rst_docs/equilibrium.rst
docs/rst_docs/gk_input.rst
docs/rst_docs/gk_input_cgyro.rst
docs/rst_docs/gk_input_gene.rst
docs/rst_docs/gk_input_gs2.rst
docs/rst_docs/gk_output.rst
docs/rst_docs/kinetics.rst
docs/rst_docs/local_geometry.rst
docs/rst_docs/local_species.rst
docs/rst_docs/miller.rst
docs/rst_docs/numerics.rst
docs/rst_docs/pyro.rst
docs/rst_docs/figures/equilibrium.png
docs/rst_docs/figures/gk_code.png
docs/rst_docs/figures/kinetics.png
docs/rst_docs/figures/pyro_structure.png
pyrokinetics/__init__.py
pyrokinetics/_version.py
pyrokinetics/constants.py
pyrokinetics/decorators.py
pyrokinetics/factory.py
pyrokinetics/local_species.py
pyrokinetics/numerics.py
pyrokinetics/pyro.py
pyrokinetics/pyroscan.py
pyrokinetics/readers.py
pyrokinetics/species.py
pyrokinetics/templates.py
pyrokinetics/typing.py
pyrokinetics.egg-info/PKG-INFO
pyrokinetics.egg-info/SOURCES.txt
pyrokinetics.egg-info/dependency_links.txt
pyrokinetics.egg-info/requires.txt
pyrokinetics.egg-info/top_level.txt
pyrokinetics/equilibrium/Equilibrium.py
pyrokinetics/equilibrium/EquilibriumReader.py
pyrokinetics/equilibrium/EquilibriumReaderGEQDSK.py
pyrokinetics/equilibrium/EquilibriumReaderTRANSP.py
pyrokinetics/equilibrium/__init__.py
pyrokinetics/equilibrium/get_flux_surface.py
pyrokinetics/examples/__init__.py
pyrokinetics/examples/example.py
pyrokinetics/examples/example_JETTO.py
pyrokinetics/examples/example_JETTO_1dscan.py
pyrokinetics/examples/example_JETTO_1dscan_complicated.py
pyrokinetics/examples/example_SCENE.py
pyrokinetics/examples/example_TRANSP.py
pyrokinetics/examples/example_addflags.py
pyrokinetics/examples/example_cgyro.py
pyrokinetics/examples/example_gene.py
pyrokinetics/examples/example_geqdsk.py
pyrokinetics/examples/example_gs2.py
pyrokinetics/examples/example_pyro.py
pyrokinetics/examples/example_read_cgyro_output.py
pyrokinetics/examples/example_read_gene_output.py
pyrokinetics/examples/example_read_gs2_output.py
pyrokinetics/examples/example_read_tglf_linear.py
pyrokinetics/examples/example_read_tglf_transport.py
pyrokinetics/gk_code/GKInput.py
pyrokinetics/gk_code/GKInputCGYRO.py
pyrokinetics/gk_code/GKInputGENE.py
pyrokinetics/gk_code/GKInputGS2.py
pyrokinetics/gk_code/GKInputTGLF.py
pyrokinetics/gk_code/GKOutputReader.py
pyrokinetics/gk_code/GKOutputReaderCGYRO.py
pyrokinetics/gk_code/GKOutputReaderGENE.py
pyrokinetics/gk_code/GKOutputReaderGS2.py
pyrokinetics/gk_code/GKOutputReaderTGLF.py
pyrokinetics/gk_code/__init__.py
pyrokinetics/kinetics/Kinetics.py
pyrokinetics/kinetics/KineticsReader.py
pyrokinetics/kinetics/KineticsReaderJETTO.py
pyrokinetics/kinetics/KineticsReaderSCENE.py
pyrokinetics/kinetics/KineticsReaderTRANSP.py
pyrokinetics/kinetics/__init__.py
pyrokinetics/local_geometry/LocalGeometry.py
pyrokinetics/local_geometry/LocalGeometryMiller.py
pyrokinetics/local_geometry/__init__.py
pyrokinetics/templates/input.cgyro
pyrokinetics/templates/input.gene
pyrokinetics/templates/input.gs2
pyrokinetics/templates/input.tglf
pyrokinetics/templates/jetto.cdf
pyrokinetics/templates/scene.cdf
pyrokinetics/templates/step.geqdsk
pyrokinetics/templates/test.geqdsk
pyrokinetics/templates/transp.cdf
pyrokinetics/templates/transp_eq.cdf
pyrokinetics/templates/transp_eq.geqdsk
pyrokinetics/templates/outputs/CGYRO_linear/bin.cgyro.geo
pyrokinetics/templates/outputs/CGYRO_linear/bin.cgyro.kxky_phi
pyrokinetics/templates/outputs/CGYRO_linear/bin.cgyro.ky_cflux
pyrokinetics/templates/outputs/CGYRO_linear/bin.cgyro.ky_flux
pyrokinetics/templates/outputs/CGYRO_linear/bin.cgyro.phib
pyrokinetics/templates/outputs/CGYRO_linear/input.cgyro
pyrokinetics/templates/outputs/CGYRO_linear/input.cgyro.gen
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.egrid
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.equilibrium
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.freq
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.grids
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.hosts
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.info
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.memory
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.mpi
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.prec
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.rotation
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.startups
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.tag
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.time
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.timing
pyrokinetics/templates/outputs/CGYRO_linear/out.cgyro.version
pyrokinetics/templates/outputs/GENE_linear/field_0001
pyrokinetics/templates/outputs/GENE_linear/miller_0001
pyrokinetics/templates/outputs/GENE_linear/nrg_0001
pyrokinetics/templates/outputs/GENE_linear/parameters_0001
pyrokinetics/templates/outputs/GS2_linear/gs2.in
pyrokinetics/templates/outputs/GS2_linear/gs2.out.nc
pyrokinetics/templates/outputs/TGLF_linear/input.tglf
pyrokinetics/templates/outputs/TGLF_linear/input.tglf.gen
pyrokinetics/templates/outputs/TGLF_linear/out.tglf.globaldump
pyrokinetics/templates/outputs/TGLF_linear/out.tglf.prec
pyrokinetics/templates/outputs/TGLF_linear/out.tglf.run
pyrokinetics/templates/outputs/TGLF_linear/out.tglf.version
pyrokinetics/templates/outputs/TGLF_linear/out.tglf.wavefunction
pyrokinetics/tests/test_decorators.py
pyrokinetics/tests/test_deepcopy.py
pyrokinetics/tests/test_pyro.py
pyrokinetics/tests/test_pyroscan.py
pyrokinetics/tests/test_reader_factory.py
pyrokinetics/tests/test_roundtrip.py
pyrokinetics/tests/test_species.py
pyrokinetics/tests/equilibrium/test_equilibrium.py
pyrokinetics/tests/equilibrium/test_equilibrium_reader_geqdsk.py
pyrokinetics/tests/equilibrium/test_equilibrium_reader_transp.py
pyrokinetics/tests/gk_code/test_gk_code_output.py
pyrokinetics/tests/gk_code/test_gk_input_cgyro.py
pyrokinetics/tests/gk_code/test_gk_input_gene.py
pyrokinetics/tests/gk_code/test_gk_input_gs2.py
pyrokinetics/tests/gk_code/test_gk_input_tglf.py
pyrokinetics/tests/gk_code/test_gk_output_reader_cgyro.py
pyrokinetics/tests/gk_code/test_gk_output_reader_gene.py
pyrokinetics/tests/gk_code/test_gk_output_reader_gs2.py
pyrokinetics/tests/gk_code/test_gk_output_reader_tglf.py
pyrokinetics/tests/gk_code/utils.py
pyrokinetics/tests/gk_code/golden_answers/cgyro_linear_output_7d551eaa.netcdf4
pyrokinetics/tests/gk_code/golden_answers/gene_linear_output_7d551eaa.netcdf4
pyrokinetics/tests/gk_code/golden_answers/gene_linear_output_9eae331.netcdf4
pyrokinetics/tests/gk_code/golden_answers/gs2_linear_output_7d551eaa.netcdf4
pyrokinetics/tests/gk_code/golden_answers/tglf_linear_output_7d551eaa.netcdf4
pyrokinetics/tests/kinetics/test_kinetics.py
pyrokinetics/tests/kinetics/test_kinetics_reader_jetto.py
pyrokinetics/tests/kinetics/test_kinetics_reader_scene.py
pyrokinetics/tests/kinetics/test_kinetics_reader_transp.py
pyrokinetics/tests/local_geometry/test_local_geometry_factory.py
pyrokinetics/tests/local_geometry/test_miller.py