Metadata-Version: 2.1
Name: geniml
Version: 0.1.0
Summary: Genomic interval toolkit
Home-page: http://geniml.databio.org
Author: Nathan Sheffield
License: BSD2
Keywords: bioinformatics,sequencing,ngs
Classifier: Development Status :: 4 - Beta
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Description-Content-Type: text/markdown
License-File: LICENSE.txt
Requires-Dist: anndata>0.9.0
Requires-Dist: genimtools>=0.0.7
Requires-Dist: fastembed>=0.1.1
Requires-Dist: gensim
Requires-Dist: genomicranges>=0.4.1
Requires-Dist: huggingface_hub
Requires-Dist: logmuse
Requires-Dist: matplotlib
Requires-Dist: numpy>=1.24.0
Requires-Dist: paramiko>=3.0.0
Requires-Dist: peppy>=0.40.0a4
Requires-Dist: pyBigWig
Requires-Dist: pydantic<2.0.0
Requires-Dist: qdrant_client
Requires-Dist: requests>=2.31.0
Requires-Dist: scanpy
Requires-Dist: seaborn
Requires-Dist: torch
Requires-Dist: ubiquerg>=0.6.3
Requires-Dist: pyarrow
Requires-Dist: iranges

# Genomic interval machine learning (geniml)

Geniml is a python package for building machine learning models of genomic interval data (BED files). It also includes ancillary functions to support other types of analyses of genomic interval data.

Documentation is hosted at [geniml.databio.org](http://geniml.databio.org/en/latest/) (source in `/docs`).

## Development

Run tests (from `/tests`) with `pytest`. Please read the [contributor guide](https://geniml.databio.org/en/latest/contributing/) to contribute.


