MANIFEST.in
README.md
setup.cfg
setup.py
scHiCTools/__init__.py
scHiCTools.egg-info/PKG-INFO
scHiCTools.egg-info/SOURCES.txt
scHiCTools.egg-info/dependency_links.txt
scHiCTools.egg-info/requires.txt
scHiCTools.egg-info/top_level.txt
scHiCTools/analysis/__init__.py
scHiCTools/analysis/clustering.py
scHiCTools/analysis/visualization.py
scHiCTools/embedding/__init__.py
scHiCTools/embedding/embedding.py
scHiCTools/embedding/reproducibility.py
scHiCTools/load/ContactMaps.py
scHiCTools/load/__init__.py
scHiCTools/load/cool.py
scHiCTools/load/cooler_api.py
scHiCTools/load/hic_straw.py
scHiCTools/load/load_hic_file.py
scHiCTools/load/processing_utils.py
scHiCTools/load/reference_genome/hg19
scHiCTools/load/reference_genome/hg38
scHiCTools/load/reference_genome/mm10
scHiCTools/load/reference_genome/mm9
test/test_all.py
test/test_clustering.py
test/test_embeding.py
test/test_load_data.py
test/test_smoothing.py