LICENSE
MANIFEST.in
README.md
setup.py
LARRY_dataset.egg-info/PKG-INFO
LARRY_dataset.egg-info/SOURCES.txt
LARRY_dataset.egg-info/dependency_links.txt
LARRY_dataset.egg-info/requires.txt
LARRY_dataset.egg-info/top_level.txt
larry/__init__.py
larry/__version__.py
larry/_analysis/_LARRY_t0_test_indices.py
larry/_analysis/__init__.py
larry/_analysis/_calculate_dominate_fate.py
larry/_analysis/_count_clonal_lineages.py
larry/_analysis/_count_clones_by_timepoint.py
larry/_analysis/_count_d2_daughter_cells.py
larry/_analysis/_estimate_growth_rates.py
larry/_analysis/_get_annotated_metadata_d2_lineage_cells.py
larry/_analysis/_get_lineage_obs.py
larry/_analysis/_growth_rate_grouped_violin_plot.py
larry/_analysis/_temporal_cmap.py
larry/_plotting/__init__.py
larry/_plotting/_confusion_matrix.py
larry/_plotting/_in_vitro_color_map.py
larry/_plotting/_multi_fate_in_vitro_color_map.py
larry/_tools/__init__.py
larry/_tools/_annotate_clone_idx_in_obs.py
larry/_tools/_annotate_fated.py
larry/_tools/_cell_fates.py
larry/_tools/_count_fate_values.py
larry/_tools/_fetch_fate_bias_data.py
larry/_tools/_index_subsets.py
larry/_tools/_subset_clonal.py
larry/_tools/_time_occupance.py
larry/_tools/_to_anndataset.py
larry/callbacks/__init__.py
larry/callbacks/_fate_prediction_callback.py
larry/callbacks/_interpolation_callback.py
larry/datasets/__init__.py
larry/datasets/_anndata_configuration.py
larry/datasets/_anndata_path_manager.py
larry/datasets/_data.py
larry/datasets/_dimension_reduction.py
larry/datasets/_directory_manager.py
larry/datasets/_figshare_downloader.py
larry/datasets/_figshare_downloads.py
larry/datasets/_in_vitro_dataset.py
larry/datasets/_load_expr_matrix.py
larry/datasets/_split_data.py
larry/datasets/_url_path_interfaces.py
larry/datasets/_dataset_utils/__init__.py
larry/datasets/_dataset_utils/_messages.py
larry/datasets/klein_lab_pp_recipe/__init__.py
larry/datasets/klein_lab_pp_recipe/_cell_cycle_genes.py
larry/datasets/klein_lab_pp_recipe/_highly_variable_genes.py
larry/datasets/klein_lab_pp_recipe/_remove_cell_cycle_correlated_genes.py
larry/datasets/klein_lab_pp_recipe/_running_quantile.py
larry/datasets/klein_lab_pp_recipe/_vscores.py
larry/tasks/__init__.py
larry/tasks/fate_prediction/F_obs.csv
larry/tasks/fate_prediction/FatePredictionSubsets.pkl
larry/tasks/fate_prediction/__init__.py
larry/tasks/fate_prediction/_cached_f_obs_frame.py
larry/tasks/fate_prediction/_compute_fate_bias.py
larry/tasks/fate_prediction/_fate_bias_matrix_generation.py
larry/tasks/fate_prediction/_fate_bias_prediction_task.py
larry/tasks/fate_prediction/_in_vitro_fate_prediction_subsets.py
larry/tasks/fate_prediction/_observed_fate_bias.py
larry/tasks/fate_prediction/_weinreb_test_set.py
larry/tasks/fate_prediction/_fate_prediction_utils/__init__.py
larry/tasks/fate_prediction/_fate_prediction_utils/_count_fate_values.py
larry/tasks/fate_prediction/_fate_prediction_utils/_lineage_classification.py
larry/tasks/fate_prediction/metrics/__init__.py
larry/tasks/fate_prediction/metrics/_multi_fated_lineage_prediction_results.py
larry/tasks/fate_prediction/metrics/_multi_idx_scoring.py
larry/tasks/fate_prediction/metrics/_multiclass_precision_recall.py
larry/tasks/fate_prediction/metrics/_negative_cross_entropy.py
larry/tasks/fate_prediction/metrics/_neutrophil_monocyte_correlation.py
larry/tasks/interpolation/__init__.py
larry/tasks/interpolation/_interpolation_data.py
larry/tasks/interpolation/_interpolation_task.py
larry/utils/__init__.py
larry/utils/_info_message.py
larry/utils/_noise.py
larry/utils/_sparse_mtx_operations.py
larry/utils/_sum_normalize.py