LICENSE
README.md
setup.py
count_fgs_sam/__init__.py
count_fgs_sam/count_fgs_sam.py
count_fgs_sam.egg-info/PKG-INFO
count_fgs_sam.egg-info/SOURCES.txt
count_fgs_sam.egg-info/dependency_links.txt
count_fgs_sam.egg-info/entry_points.txt
count_fgs_sam.egg-info/requires.txt
count_fgs_sam.egg-info/top_level.txt
count_fgs_sam/tests/Brunello_NTCs_mismatch.fasta
count_fgs_sam/tests/Brunello_NTCs_mismatch.fasta.fai
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_fewRC___all.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch_3fail_5dup___all.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch_8paired___all.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch___all.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch___all.cram
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch___all_k5.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_mismatch___all_ref.cram
count_fgs_sam/tests/NTCreads+rnd_1000_align-Brunello_NTCs_redundant___all.bam
count_fgs_sam/tests/NTCreads+rnd_1000_align-simple_decoys___all.bam
count_fgs_sam/tests/NTCreads+rnd_align-Brunello_NTCs___all.bam
count_fgs_sam/tests/NTCreads+rnd_align-Brunello_NTCs_mismatch___all.bam
count_fgs_sam/tests/__init__.py
count_fgs_sam/tests/output1000_default.tsv
count_fgs_sam/tests/output_M21.tsv
count_fgs_sam/tests/output_M21c185.tsv
count_fgs_sam/tests/output_a10.tsv
count_fgs_sam/tests/output_ambiguous.tsv
count_fgs_sam/tests/output_c189.tsv
count_fgs_sam/tests/output_c194.tsv
count_fgs_sam/tests/output_default.tsv
count_fgs_sam/tests/output_default_detailed.tsv
count_fgs_sam/tests/output_l19.tsv
count_fgs_sam/tests/output_l19p189_length.tsv
count_fgs_sam/tests/output_length.tsv
count_fgs_sam/tests/output_m19.tsv
count_fgs_sam/tests/output_m19M21_length.tsv
count_fgs_sam/tests/output_m19M21c185.tsv
count_fgs_sam/tests/output_m19c185.tsv
count_fgs_sam/tests/output_optimal.tsv
count_fgs_sam/tests/output_optimal_detailed.tsv
count_fgs_sam/tests/output_p201.tsv
count_fgs_sam/tests/output_unacceptable.tsv
count_fgs_sam/tests/test_count_fgs_sam.py