LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
src/robust_deid/__init__.py
src/robust_deid.egg-info/PKG-INFO
src/robust_deid.egg-info/SOURCES.txt
src/robust_deid.egg-info/dependency_links.txt
src/robust_deid.egg-info/entry_points.txt
src/robust_deid.egg-info/not-zip-safe
src/robust_deid.egg-info/top_level.txt
src/robust_deid/data_processing/__init__.py
src/robust_deid/data_processing/data_loader.py
src/robust_deid/deid/__init__.py
src/robust_deid/deid/text_deid.py
src/robust_deid/deid/utils.py
src/robust_deid/ner_datasets/__init__.py
src/robust_deid/ner_datasets/dataset_creator.py
src/robust_deid/ner_datasets/dataset_splitter.py
src/robust_deid/ner_datasets/span_fixer.py
src/robust_deid/ner_datasets/span_validation.py
src/robust_deid/ner_datasets/dataset_builder/__init__.py
src/robust_deid/ner_datasets/dataset_builder/dataset.py
src/robust_deid/ner_datasets/dataset_builder/sentence_dataset.py
src/robust_deid/ner_datasets/dataset_builder/labels/__init__.py
src/robust_deid/ner_datasets/dataset_builder/labels/mismatch_error.py
src/robust_deid/ner_datasets/dataset_builder/labels/ner_predict_token_labels.py
src/robust_deid/ner_datasets/dataset_builder/labels/ner_token_labels.py
src/robust_deid/ner_datasets/distribution/__init__.py
src/robust_deid/ner_datasets/distribution/dataset_splits.py
src/robust_deid/ner_datasets/distribution/ner_distribution.py
src/robust_deid/ner_datasets/distribution/print_distribution.py
src/robust_deid/ner_datasets/preprocessing/__init__.py
src/robust_deid/ner_datasets/preprocessing/preprocessing_loader.py
src/robust_deid/ner_datasets/preprocessing/sentencizers/__init__.py
src/robust_deid/ner_datasets/preprocessing/sentencizers/note_sentencizer.py
src/robust_deid/ner_datasets/preprocessing/sentencizers/spacy_sentencizer.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/__init__.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/clinical_spacy_tokenizer.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/core_nlp_tokenizer.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/spacy_tokenizer.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/abbreviations/__init__.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/abbreviations/medical_abbreviations.txt
src/robust_deid/ner_datasets/preprocessing/tokenizers/utils/__init__.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/utils/clean_regex.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/utils/clinical_regex.py
src/robust_deid/ner_datasets/preprocessing/tokenizers/utils/date_regex.py
src/robust_deid/sequence_tagging/__init__.py
src/robust_deid/sequence_tagging/recall_thresholder.py
src/robust_deid/sequence_tagging/sequence_tagger.py
src/robust_deid/sequence_tagging/arguments/__init__.py
src/robust_deid/sequence_tagging/arguments/data_training_arguments.py
src/robust_deid/sequence_tagging/arguments/evaluation_arguments.py
src/robust_deid/sequence_tagging/arguments/model_arguments.py
src/robust_deid/sequence_tagging/dataset_builder/__init__.py
src/robust_deid/sequence_tagging/dataset_builder/dataset_tokenizer.py
src/robust_deid/sequence_tagging/dataset_builder/label_mapper.py
src/robust_deid/sequence_tagging/dataset_builder/ner_dataset.py
src/robust_deid/sequence_tagging/dataset_builder/ner_labels.py
src/robust_deid/sequence_tagging/evaluation/__init__.py
src/robust_deid/sequence_tagging/evaluation/metrics_compute.py
src/robust_deid/sequence_tagging/evaluation/note_evaluation/__init__.py
src/robust_deid/sequence_tagging/evaluation/note_evaluation/note_evaluation.py
src/robust_deid/sequence_tagging/evaluation/note_evaluation/note_sequence_evaluation.py
src/robust_deid/sequence_tagging/evaluation/note_evaluation/note_token_evaluation.py
src/robust_deid/sequence_tagging/evaluation/note_evaluation/violations.py
src/robust_deid/sequence_tagging/evaluation/results/__init__.py
src/robust_deid/sequence_tagging/evaluation/results/results_formatter.py
src/robust_deid/sequence_tagging/models/__init__.py
src/robust_deid/sequence_tagging/models/hf/__init__.py
src/robust_deid/sequence_tagging/models/hf/model_picker.py
src/robust_deid/sequence_tagging/models/hf/crf/__init__.py
src/robust_deid/sequence_tagging/models/hf/crf/conditional_random_field_sub.py
src/robust_deid/sequence_tagging/models/hf/crf/crf_bert_model_for_token_classification.py
src/robust_deid/sequence_tagging/models/hf/crf/crf_token_classifier_output.py
src/robust_deid/sequence_tagging/models/hf/crf/utils.py
src/robust_deid/sequence_tagging/note_aggregate/__init__.py
src/robust_deid/sequence_tagging/note_aggregate/note_level_aggregator.py
src/robust_deid/sequence_tagging/post_process/__init__.py
src/robust_deid/sequence_tagging/post_process/model_outputs/__init__.py
src/robust_deid/sequence_tagging/post_process/model_outputs/argmax_process.py
src/robust_deid/sequence_tagging/post_process/model_outputs/crf_argmax_process.py
src/robust_deid/sequence_tagging/post_process/model_outputs/crf_process.py
src/robust_deid/sequence_tagging/post_process/model_outputs/logits_process.py
src/robust_deid/sequence_tagging/post_process/model_outputs/post_process_picker.py
src/robust_deid/sequence_tagging/post_process/model_outputs/threshold_process_max.py
src/robust_deid/sequence_tagging/post_process/model_outputs/threshold_process_sum.py
src/robust_deid/sequence_tagging/post_process/model_outputs/utils.py