Package csb :: Package bio :: Package fragments :: Module isites :: Class Library

Class Library

object --+
         |
        Library

Known Subclasses:

hhsites.HMMLibraryWrapper

Representation of an I-Sites peptide fragment library. Provides dictionary-like access to the underlying Cluster objects by either cluster.id or cluster.representative.accesion.

Instance Methods

__contains__(self, key)

source code

__getitem__(self, item)

source code

__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

compact(self)
Compact the library by excluding unimportant information:

source code

serialize(self, file)
Serialize the library to a file.

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Static Methods

Library

deserialize(file)
Load I-sites from a serialization file.

source code

Properties
	clusters
Inherited from `object`: `__class__`

Method Details

init(self)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

compact(self)

source code

Compact the library by excluding unimportant information:

documentation
clusters: file, program, covariance

Raises:

AttributeError - on attempt to compact a delay-parsed library

deserialize(file)
Static Method

source code

Load I-sites from a serialization file.

Parameters:

file (str) - source file name

Returns: Library

the deserialized library object

serialize(self, file)

source code

Serialize the library to a file.

Parameters:

file (str) - output file name

Raises:

AttributeError - on attempt to serialize a delay-parsed library

Property Details

clusters

Get Method:: unreachable.clusters(self)
Set Method:: unreachable.clusters(self, clusters)

Class Library

__init__(self) (Constructor)

compact(self)

deserialize(file) Static Method

serialize(self, file)

clusters

init(self)
(Constructor)

deserialize(file)
Static Method