Package csb :: Package bio :: Package fragments :: Class TargetSegment

Class TargetSegment

object --+
         |
        TargetSegment

Instance Methods

__init__(self, start, end, count)
x.__init__(...) initializes x; see help(type(x)) for signature

source code

assign(self, fragment)

source code

best(self, method='rmsd_to') source code

confidence(self)

source code

longest(self)

source code

pairwise_mda(self, min_overlap=5)

source code

pairwise_rmsd(self, min_overlap=5)

source code

pairwise_sa_rmsd(self, profiles='.', min_overlap=5) source code

pairwise_scores(self, profiles='.', min_overlap=5) source code

rmsd_consistency(self, threshold=1.5)

source code

rmsd_entropy(self, binsize=0.1)

source code

sa_rmsd_consistency(self, threshold=0.4, profiles='.') source code

score_entropy(self, profiles='.', binsize=1) source code

true_positives(self, threshold=1.5)

source code

verybest(self)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties
	assignments
	count
	end
	length
	start
Inherited from `object`: `__class__`

Method Details

init(self, start, end, count)
(Constructor)

source code

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

Property Details

assignments

Get Method:: unreachable.assignments(self)

count

Get Method:: unreachable.count(self)

end

Get Method:: unreachable.end(self)

length

Get Method:: unreachable.length(self)

start

Get Method:: unreachable.start(self)

Class TargetSegment

__init__(self, start, end, count) (Constructor)

assignments

count

end

length

start

init(self, start, end, count)
(Constructor)