LICENSE
MANIFEST.in
Makefile
README.md
pyproject.toml
setup.py
bbi/__init__.py
bbi/_bbi.py
bbi/cbbi.pxd
bbi/cbbi.pyx
include/ace.h
include/aliType.h
include/annoAssembly.h
include/annoFilter.h
include/annoFormatTab.h
include/annoFormatter.h
include/annoGrateWig.h
include/annoGrator.h
include/annoGratorQuery.h
include/annoOption.h
include/annoRow.h
include/annoStreamBigBed.h
include/annoStreamBigWig.h
include/annoStreamTab.h
include/annoStreamVcf.h
include/annoStreamer.h
include/apacheLog.h
include/asParse.h
include/axt.h
include/bPlusTree.h
include/bamFile.h
include/bandExt.h
include/base64.h
include/basicBed.h
include/bbiFile.h
include/bedTabix.h
include/bigBed.h
include/bigWig.h
include/binRange.h
include/bits.h
include/blastParse.h
include/boxClump.h
include/boxLump.h
include/bwgInternal.h
include/cda.h
include/cgi_build_rules.mk
include/chain.h
include/chainBlock.h
include/chainConnect.h
include/chainToAxt.h
include/chainToPsl.h
include/cheapcgi.h
include/cirTree.h
include/codebias.h
include/common.h
include/common.mk
include/correlate.h
include/crTree.h
include/crudeali.h
include/diGraph.h
include/diGraph.h.97
include/dlist.h
include/dnaLoad.h
include/dnaMarkov.h
include/dnaMotif.h
include/dnaseq.h
include/dnautil.h
include/dtdParse.h
include/dyOut.h
include/dystring.h
include/elmTree.h
include/emblParse.h
include/ens.h
include/errAbort.h
include/errCatch.h
include/fa.h
include/fieldedTable.h
include/filePath.h
include/flydna.h
include/fof.h
include/fq.h
include/fuzzyFind.h
include/gapCalc.h
include/gdf.h
include/genoFind.h
include/genomeRangeTree.h
include/gfClientLib.h
include/gfPcrLib.h
include/gfWebLib.h
include/gff.h
include/gff3.h
include/gfxPoly.h
include/gifLabel.h
include/hacTree.h
include/hash.h
include/hex.h
include/hgGene.h
include/hgap.h
include/hgdb.h
include/histogram.h
include/hmac.h
include/hmmPfamParse.h
include/hmmstats.h
include/htmlPage.h
include/htmshell.h
include/https.h
include/intValTree.h
include/internet.h
include/itsa.h
include/iupac.h
include/jointalign.h
include/jpegSize.h
include/jsonParse.h
include/jsonWrite.h
include/keys.h
include/knetUdc.h
include/kxTok.h
include/linefile.h
include/localEnvironment.mk
include/localmem.h
include/log.h
include/longToList.h
include/maDbRep.h
include/maToFf.h
include/maf.h
include/mailViaPipe.h
include/md5.h
include/memalloc.h
include/memgfx.h
include/meta.h
include/metaWig.h
include/mime.h
include/net.h
include/nib.h
include/nibTwo.h
include/nt4.h
include/obscure.h
include/oldGff.h
include/oligoTm.h
include/ooc.h
include/options.h
include/pairDistance.h
include/pairHmm.h
include/paraFetch.h
include/patSpace.h
include/peakCluster.h
include/phyloTree.h
include/pipeline.h
include/portable.h
include/psGfx.h
include/psPoly.h
include/pscmGfx.h
include/psl.h
include/pslTbl.h
include/pslTransMap.h
include/pthreadDoList.h
include/pthreadWrap.h
include/qa.h
include/quickHeap.h
include/quotedP.h
include/ra.h
include/raToStruct.h
include/rainbow.h
include/rangeTree.h
include/rbTree.h
include/regexHelper.h
include/repMask.h
include/rle.h
include/rnautil.h
include/rql.h
include/rudp.h
include/scoreWindow.h
include/seg.h
include/seqOut.h
include/seqStats.h
include/shaRes.h
include/sig.h
include/slog.h
include/snof.h
include/snofmake.h
include/spaceSaver.h
include/spacedColumn.h
include/spacedSeed.h
include/splatAli.h
include/splix.h
include/sqlList.h
include/sqlNum.h
include/subText.h
include/sufa.h
include/sufx.h
include/supStitch.h
include/synQueue.h
include/tabRow.h
include/tagStorm.h
include/textOut.h
include/tokenizer.h
include/trans3.h
include/trix.h
include/twoBit.h
include/udc.h
include/unfin.h
include/userApp.mk
include/vGfx.h
include/vcf.h
include/vcfBits.h
include/verbose.h
include/wormdna.h
include/xAli.h
include/xa.h
include/xap.h
include/xenalign.h
include/xmlEscape.h
include/xp.h
include/zlibFace.h
pybbi.egg-info/PKG-INFO
pybbi.egg-info/SOURCES.txt
pybbi.egg-info/dependency_links.txt
pybbi.egg-info/requires.txt
pybbi.egg-info/top_level.txt
src/README
src/aliType.c
src/annoAssembly.c
src/annoFilter.c
src/annoFormatTab.c
src/annoFormatter.c
src/annoGrateWig.c
src/annoGrator.c
src/annoGratorQuery.c
src/annoOption.c
src/annoRow.c
src/annoStreamBigBed.c
src/annoStreamBigWig.c
src/annoStreamTab.c
src/annoStreamVcf.c
src/annoStreamer.c
src/apacheLog.c
src/asParse.c
src/axt.c
src/axtAffine.c
src/bPlusTree.c
src/bamFile.c
src/base64.c
src/basicBed.c
src/bbiRead.c
src/bbiWrite.c
src/bedTabix.c
src/bigBed.c
src/binRange.c
src/bits.c
src/blastOut.c
src/blastParse.c
src/boxClump.c
src/boxLump.c
src/bwgCreate.c
src/bwgQuery.c
src/bwgValsOnChrom.c
src/cda.c
src/chain.c
src/chainBlock.c
src/chainConnect.c
src/chainToAxt.c
src/chainToPsl.c
src/cheapcgi.c
src/cirTree.c
src/codebias.c
src/colHash.c
src/colHash.h
src/common.c
src/common.ps
src/common.pss
src/correlate.c
src/crTree.c
src/dgRange.c
src/diGraph.c
src/diGraph.c.97
src/dlist.c
src/dnaLoad.c
src/dnaMarkov.c
src/dnaMotif.c
src/dnaMotif.pss
src/dnaseq.c
src/dnautil.c
src/dtdParse.c
src/dyOut.c
src/dystring.c
src/elmTree.c
src/emblParse.c
src/errAbort.c
src/errCatch.c
src/fa.c
src/ffAli.c
src/ffScore.c
src/fieldedTable.c
src/filePath.c
src/fixColor.c
src/flydna.c
src/fof.c
src/fq.c
src/fuzzyShow.c
src/gapCalc.c
src/gdf.c
src/gemfont.c
src/gemfont.h
src/genomeRangeTree.c
src/gfNet.c
src/gff.c
src/gff3.c
src/gfxPoly.c
src/gifLabel.c
src/gifcodes.h
src/gifcomp.c
src/gifdecomp.c
src/gifread.c
src/gifwrite.c
src/hacTree.c
src/hash.c
src/hex.c
src/histogram.c
src/hmac.c
src/hmmPfamParse.c
src/hmmstats.c
src/htmlPage.c
src/htmshell.c
src/https.c
src/intExp.c
src/intValTree.c
src/internet.c
src/itsa.c
src/iupac.c
src/jointalign.c
src/jpegSize.c
src/jsonParse.c
src/jsonWrite.c
src/keys.c
src/knetUdc.c
src/kxTok.c
src/lineFileOnBigBed.c
src/linefile.c
src/localmem.c
src/log.c
src/longToList.c
src/maf.c
src/maf.doc
src/mafFromAxt.c
src/mafScore.c
src/mailViaPipe.c
src/makefile
src/md5.c
src/memalloc.c
src/memgfx.c
src/meta.c
src/metaWig.c
src/mgCircle.c
src/mgPolygon.c
src/mime.c
src/net.c
src/nib.c
src/nibTwo.c
src/nt4.c
src/numObscure.c
src/obscure.c
src/oldGff.c
src/oligoTm.c
src/options.c
src/osunix.c
src/oswin9x.c
src/pairDistance.c
src/pairHmm.c
src/paraFetch.c
src/peakCluster.c
src/phyloTree.c
src/pipeline.c
src/pngwrite.c
src/portimpl.c
src/portimpl.h
src/psGfx.c
src/psPoly.c
src/pscmGfx.c
src/psl.as
src/psl.c
src/psl.sql
src/pslGenoShow.c
src/pslShow.c
src/pslTbl.c
src/pslTransMap.c
src/pslWScore.as
src/pslWScore.sql
src/pthreadDoList.c
src/pthreadWrap.c
src/qa.c
src/quickHeap.c
src/quotedP.c
src/ra.c
src/raToStruct.c
src/rainbow.c
src/rangeTree.c
src/rbTree.c
src/regexHelper.c
src/repMask.c
src/rle.c
src/rnautil.c
src/rqlEval.c
src/rqlParse.c
src/rudp.c
src/scoreWindow.c
src/seg.c
src/seqOut.c
src/seqStats.c
src/servBrcMcw.c
src/servCrunx.c
src/servcis.c
src/servcl.c
src/servmsII.c
src/servpws.c
src/shaRes.c
src/slog.c
src/snof.c
src/snofmake.c
src/snofsig.c
src/spaceSaver.c
src/spacedColumn.c
src/spacedSeed.c
src/splatAli.as
src/splatAli.c
src/sqlList.c
src/sqlNum.c
src/subText.c
src/sufa.c
src/sufx.c
src/synQueue.c
src/tabRow.c
src/tagStorm.c
src/textOut.c
src/tokenizer.c
src/trix.c
src/twoBit.c
src/udc.c
src/vGfx.c
src/vGfxPrivate.h
src/vPng.c
src/valgrind.suppress
src/vcf.c
src/vcfBits.c
src/verbose.c
src/wildcmp.c
src/wormdna.c
src/xAli.as
src/xAli.c
src/xAli.sql
src/xa.c
src/xap.c
src/xenshow.c
src/xmlEscape.c
src/xp.c
src/zlibFace.c
src/alpha/placeHolder.c
src/font/README
src/font/mgCourier10.c
src/font/mgCourier12.c
src/font/mgCourier14.c
src/font/mgCourier18.c
src/font/mgCourier24.c
src/font/mgCourier34.c
src/font/mgCourier8.c
src/font/mgHelvetica10.c
src/font/mgHelvetica12.c
src/font/mgHelvetica14.c
src/font/mgHelvetica18.c
src/font/mgHelvetica24.c
src/font/mgHelvetica34.c
src/font/mgHelvetica8.c
src/font/mgHelveticaBold10.c
src/font/mgHelveticaBold12.c
src/font/mgHelveticaBold14.c
src/font/mgHelveticaBold18.c
src/font/mgHelveticaBold24.c
src/font/mgHelveticaBold34.c
src/font/mgHelveticaBold8.c
src/font/mgMenlo12.c
src/font/mgSail8.c
src/font/mgSixhi6.c
src/font/mgTimes10.c
src/font/mgTimes12.c
src/font/mgTimes14.c
src/font/mgTimes18.c
src/font/mgTimes24.c
src/font/mgTimes34.c
src/font/mgTimes8.c
src/i386/placeHolder.c
src/i686/placeHolder.c
src/ppc/placeHolder.c
src/sparc/placeHolder.c
src/tests/dyStringTester.c
src/tests/errCatchTest.c
src/tests/fetchUrlTest.c
src/tests/gff3Tester.c
src/tests/hacTreeTest.c
src/tests/htmlExpandUrlTest.c
src/tests/htmlMimeTest.c
src/tests/htmlPageTest.c
src/tests/makefile
src/tests/mimeDecodeTest.c
src/tests/mimeTester.c
src/tests/miniBlat.c
src/tests/pipelineTester.c
src/tests/safeTester.c
src/tests/tabixFetch.c
src/tests/testBase64.c
src/tests/testHash.c
src/tests/testOutOfMem.c
src/tests/testQuotedP.c
src/tests/testQuotedString.c
src/tests/testSumDoubles.c
src/tests/udcTest.c
src/tests/udcTrials.csh
src/tests/vcfParseTest.c
src/tests/expected/base64Decode.out
src/tests/expected/base64Encode.out
src/tests/expected/errCatch.bad
src/tests/expected/errCatch.good
src/tests/expected/gff3DiscontiousTest.out
src/tests/expected/gff3ErrorCasesTest.err
src/tests/expected/gff3SacCerTest.out
src/tests/expected/google.out
src/tests/expected/hacTreeTest.out
src/tests/expected/hashTest1.out
src/tests/expected/htmlExpandUrlTest
src/tests/expected/htmlMime1.out
src/tests/expected/mime1.out
src/tests/expected/mime2.out
src/tests/expected/mime3.out
src/tests/expected/mime4.out
src/tests/expected/mime5.out
src/tests/expected/mimeAltHead.out
src/tests/expected/mimeAutoBoundary.out
src/tests/expected/mimeBin.out
src/tests/expected/mimeBlat.out
src/tests/expected/noName1.html
src/tests/expected/pipelineExecError.err
src/tests/expected/pipelineExecError.parent.err
src/tests/expected/pipelineWriteErr.out
src/tests/expected/quotedPDecode.out
src/tests/expected/quotedPEncode.out
src/tests/expected/simple1.wc
src/tests/expected/tabixFetch1kGNoGenotypes.out
src/tests/expected/tabixFetch1kGWithGenotypes.out
src/tests/expected/vcfParse1kGNoGenotypes.out
src/tests/expected/vcfParse1kGWithGenotypes.out
src/tests/expected/vcfParseOldV3.out
src/tests/input/20091110_pilot1_vcf_merged_call_sets_YRI.2and3_way.vcf.gz
src/tests/input/20091110_pilot1_vcf_merged_call_sets_YRI.2and3_way.vcf.gz.tbi
src/tests/input/YRI.low_coverage.2010_07_excerpt.genotypes.vcf.gz
src/tests/input/YRI.low_coverage.2010_07_excerpt.genotypes.vcf.gz.tbi
src/tests/input/YRI.trio.2010_06.novelsequences.sites.vcf.gz
src/tests/input/YRI.trio.2010_06.novelsequences.sites.vcf.gz.tbi
src/tests/input/discontinuous.gff3
src/tests/input/errorCasesTest.gff3
src/tests/input/google.html
src/tests/input/hacTreeTest.txt
src/tests/input/hashTest1.txt
src/tests/input/htmlMime.txt
src/tests/input/mime1.txt
src/tests/input/mime2.txt
src/tests/input/mime3.txt
src/tests/input/mime4.txt
src/tests/input/mime5.txt
src/tests/input/mimeAltHead.txt
src/tests/input/mimeAutoBoundary.txt
src/tests/input/mimeBin.txt
src/tests/input/mimeBlat.txt
src/tests/input/mimeDecodeTest.txt
src/tests/input/sacCerTest.gff3
src/tests/input/simple1.txt
src/tests/input/specialCasesTest.gff3
src/x86_64/placeHolder.c
tests/__init__.py
tests/bigBedExample.bb
tests/bigGenePred.as
tests/bigGenePred.bb
tests/bigGenePred.txt
tests/bigWigExample.bw
tests/hg38.chrom.sizes
tests/test_bbi.py