.gitignore
CHANGELOG
COPYING
Dockerfile
README.md
requirements.txt
setup.py
STAMP_input_example/metadata.txt
STAMP_input_example/profile_file.txt
logo/superfocus_logo_small.png
superfocus.egg-info/PKG-INFO
superfocus.egg-info/SOURCES.txt
superfocus.egg-info/dependency_links.txt
superfocus.egg-info/entry_points.txt
superfocus.egg-info/not-zip-safe
superfocus.egg-info/requires.txt
superfocus.egg-info/top_level.txt
superfocus_app/__init__.py
superfocus_app/do_alignment.py
superfocus_app/superfocus.py
superfocus_app/superfocus_downloadDB.py
superfocus_app/db/database_PKs.txt
superfocus_app/db/organisms2subsystem.txt
superfocus_app/db/focus_reduction/blast/.gitignore
superfocus_app/db/focus_reduction/diamond/.gitignore
superfocus_app/db/focus_reduction/rapsearch2/.gitignore
superfocus_app/db/static/blast/.gitignore
superfocus_app/db/static/diamond/.gitignore
superfocus_app/db/static/rapsearch2/.gitignore
superfocus_app/db/tmp/.gitignore
tests/test_do_alignment.py
tests/test_superfocus.py
tests/__pycache__/test_superfocus.cpython-36-PYTEST.pyc