LICENSE
MANIFEST.in
README.txt
setup.py
ambivert/__init__.py
ambivert/ambivert.py
ambivert/call_variants.py
ambivert/insert_variants.py
ambivert/mpileup.py
ambivert/sequence_utilities.py
ambivert/simulate_variants.py
ambivert/truseq_manifest.py
ambivert.egg-info/PKG-INFO
ambivert.egg-info/SOURCES.txt
ambivert.egg-info/dependency_links.txt
ambivert.egg-info/entry_points.txt
ambivert.egg-info/not-zip-safe
ambivert.egg-info/requires.txt
ambivert.egg-info/top_level.txt
ambivert/align/__init__.py
ambivert/align/align_ctypes.py
ambivert/tests/__init__.py
ambivert/tests/test_ambivert.py
ambivert/tests/test_call_variants.py
ambivert/tests/test_insert_variants.py
ambivert/tests/test_sequence_utilities.py
ambivert/tests/test_simulate_variants.py
ambivert/tests/test_truseq_manifest.py
ambivert/tests/data/testdata_R1.fastq
ambivert/tests/data/testdata_R2.fastq
ambivert/tests/data/testdatamanifest.txt
ambivert/tests/data/testdatareferences.fasta
lib/align/align.c
lib/align/alignment.c
lib/align/global_align.c
lib/align/glocal_align.c
lib/align/local_align.c