Metadata-Version: 1.1
Name: scipion-em-ccp4
Version: 3.0.0
Summary: CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher
Home-page: https://github.com/scipion-em/scipion-em-ccp4
Author: Roberto Marabini and Marta Martinez
Author-email: scipion@cnb.csic.es
License: UNKNOWN
Description: ===================
        CCP4 scipion plugin
        ===================
        
        This plugin allows to use CCP4 programs within the Scipion framework. **You need to install the CCP4 suite before installing the plugin**, see section "Binary Files" for details.
        
        CCP4, from Collaborative Computational Project Number 4, is a software suite that allows model building of macromolecule structures obtained by X-ray crystallography, and that has been extended to other techniques like cryo-EM (see `CCP4 home page <http://www.ccp4.ac.uk/>`_ for details).
        
        Programs from CCP4 included in the Scipion framework for model building:
        
          * coot
          * refmac
        
        ===================
        Install this plugin
        ===================
        
        You will need to use `2.0.0 <https://github.com/I2PC/scipion/releases/tag/v2.0>`_ version of Scipion to run these protocols. To install the plugin, you have two options:
        
        - **Stable version**  
        
        .. code-block:: 
        
              scipion installp -p scipion-em-ccp4
              
        OR
        
          - through the plugin manager GUI by launching Scipion and following **Configuration** >> **Plugins**
              
        - **Developer's version** 
        
        1. Download repository: 
        
        .. code-block::
        
                    git clone https://github.com/scipion-em/scipion-em-ccp4.git
        
        2. Install:
        
        .. code-block::
        
                   scipion installp -p path_to_scipion-em-ccp4 --devel
        
        
        
        - **Binary files** 
        
        CCP4 binaries will *NOT* be installed automatically with the plugin. The independent installation of CCP4 software suite by the user is required before running the programs. Default installation path assumed is */usr/local/ccp4-7.0*; this path or any other of your preference has to be set in *CCP4_HOME* in *scipion.conf*. We recommend to install CCP4 version 7.0.056 or higher. (see http://www.ccp4.ac.uk/download/#os=linux)
        
        
        
        - **Tests**
        
        Tested with CCP4 versions: 7.0.056 and 7.0.066.
        
        To check the installation, simply run the following Scipion test: 
        
        * scipion test ccp4.tests.test_protocol_coot_refmac
        
        
        
        - **Supported versions of CCP4**
        
        7.0.056 or higher.
        
        - **Additional Instruction**
        
        see https://github.com/scipion-em/scipion-em-ccp4/wiki
        
        =========
        Protocols
        =========
        
        * coot refinement: Molecular interactive graphics application used for flexible fitting, refinement, model completion, and validation of structures of macromolecules regarding electron density maps. See the `details <https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/>`_ of *Coot* utilities. 
        * refmac: Automatic refinement program in Fourier space of macromolecule structures regarding electron density maps. See ` <http://www.ccp4.ac.uk/html/refmac5/description.html>`_ of *Refmac* utilities.
        
        
        
        
        ========
        Examples
        ========
        
        See `Model Building Tutorial <https://github.com/I2PC/scipion/wiki/tutorials/tutorial_model_building_basic.pdf>`_
        
        
        
        
        ===============
        Buildbot status
        ===============
        
        Status devel version: 
        
        .. image:: http://scipion-test.cnb.csic.es:9980/badges/ccp4_devel.svg
        
        Status production version: 
        
        .. image:: http://scipion-test.cnb.csic.es:9980/badges/ccp4_prod.svg
        
        
Keywords: scipion cryoem imageprocessing scipion-3.0
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
