MANIFEST.in
setup.cfg
setup.py
TransVar.egg-info/PKG-INFO
TransVar.egg-info/SOURCES.txt
TransVar.egg-info/dependency_links.txt
TransVar.egg-info/top_level.txt
bin/transvar
external/pytabix/bam_endian.h
external/pytabix/bgzf.c
external/pytabix/bgzf.h
external/pytabix/bgzip.c
external/pytabix/index.c
external/pytabix/khash.h
external/pytabix/knetfile.c
external/pytabix/knetfile.h
external/pytabix/ksort.h
external/pytabix/kstring.c
external/pytabix/kstring.h
external/pytabix/tabix.h
external/pytabix/tabixmodule.c
external/samtools/Makefile
external/samtools/bam.c
external/samtools/bam.h
external/samtools/bam2bcf.c
external/samtools/bam2bcf.h
external/samtools/bam2bcf_indel.c
external/samtools/bam2depth.c
external/samtools/bam_aux.c
external/samtools/bam_cat.c
external/samtools/bam_color.c
external/samtools/bam_endian.h
external/samtools/bam_flags.c
external/samtools/bam_import.c
external/samtools/bam_index.c
external/samtools/bam_lpileup.c
external/samtools/bam_lpileup.h
external/samtools/bam_mate.c
external/samtools/bam_md.c
external/samtools/bam_plbuf.c
external/samtools/bam_plbuf.h
external/samtools/bam_plcmd.c
external/samtools/bam_reheader.c
external/samtools/bam_rmdup.c
external/samtools/bam_rmdupse.c
external/samtools/bam_sort.c
external/samtools/bam_split.c
external/samtools/bam_stat.c
external/samtools/bam_tview.c
external/samtools/bam_tview.h
external/samtools/bam_tview_curses.c
external/samtools/bam_tview_html.c
external/samtools/bamshuf.c
external/samtools/bamtk.c
external/samtools/bedcov.c
external/samtools/bedidx.c
external/samtools/cut_target.c
external/samtools/errmod.c
external/samtools/errmod.h
external/samtools/faidx.c
external/samtools/kprobaln.c
external/samtools/kprobaln.h
external/samtools/padding.c
external/samtools/phase.c
external/samtools/sam.c
external/samtools/sam.h
external/samtools/sam_header.c
external/samtools/sam_header.h
external/samtools/sam_view.c
external/samtools/sample.c
external/samtools/sample.h
external/samtools/samtools.h
external/samtools/stats.c
external/samtools/stats_isize.c
external/samtools/stats_isize.h
external/samtools/version.h
external/samtools/htslib-1.2.1/Makefile
external/samtools/htslib-1.2.1/bgzf.c
external/samtools/htslib-1.2.1/bgzip.c
external/samtools/htslib-1.2.1/config.mk
external/samtools/htslib-1.2.1/config.mk.in
external/samtools/htslib-1.2.1/configure
external/samtools/htslib-1.2.1/faidx.c
external/samtools/htslib-1.2.1/hfile.c
external/samtools/htslib-1.2.1/hfile_internal.h
external/samtools/htslib-1.2.1/hfile_irods.c
external/samtools/htslib-1.2.1/hfile_net.c
external/samtools/htslib-1.2.1/hts.c
external/samtools/htslib-1.2.1/htsfile.c
external/samtools/htslib-1.2.1/htslib.mk
external/samtools/htslib-1.2.1/htslib_vars.mk
external/samtools/htslib-1.2.1/kfunc.c
external/samtools/htslib-1.2.1/knetfile.c
external/samtools/htslib-1.2.1/kstring.c
external/samtools/htslib-1.2.1/regidx.c
external/samtools/htslib-1.2.1/sam.c
external/samtools/htslib-1.2.1/synced_bcf_reader.c
external/samtools/htslib-1.2.1/tabix.c
external/samtools/htslib-1.2.1/tbx.c
external/samtools/htslib-1.2.1/vcf.c
external/samtools/htslib-1.2.1/vcf_sweep.c
external/samtools/htslib-1.2.1/vcfutils.c
external/samtools/htslib-1.2.1/version.h
external/samtools/htslib-1.2.1/cram/cram.h
external/samtools/htslib-1.2.1/cram/cram_codecs.c
external/samtools/htslib-1.2.1/cram/cram_codecs.h
external/samtools/htslib-1.2.1/cram/cram_decode.c
external/samtools/htslib-1.2.1/cram/cram_decode.h
external/samtools/htslib-1.2.1/cram/cram_encode.c
external/samtools/htslib-1.2.1/cram/cram_encode.h
external/samtools/htslib-1.2.1/cram/cram_index.c
external/samtools/htslib-1.2.1/cram/cram_index.h
external/samtools/htslib-1.2.1/cram/cram_io.c
external/samtools/htslib-1.2.1/cram/cram_io.h
external/samtools/htslib-1.2.1/cram/cram_samtools.c
external/samtools/htslib-1.2.1/cram/cram_samtools.h
external/samtools/htslib-1.2.1/cram/cram_stats.c
external/samtools/htslib-1.2.1/cram/cram_stats.h
external/samtools/htslib-1.2.1/cram/cram_structs.h
external/samtools/htslib-1.2.1/cram/files.c
external/samtools/htslib-1.2.1/cram/mFILE.c
external/samtools/htslib-1.2.1/cram/mFILE.h
external/samtools/htslib-1.2.1/cram/md5.c
external/samtools/htslib-1.2.1/cram/md5.h
external/samtools/htslib-1.2.1/cram/misc.h
external/samtools/htslib-1.2.1/cram/open_trace_file.c
external/samtools/htslib-1.2.1/cram/open_trace_file.h
external/samtools/htslib-1.2.1/cram/os.h
external/samtools/htslib-1.2.1/cram/pooled_alloc.c
external/samtools/htslib-1.2.1/cram/pooled_alloc.h
external/samtools/htslib-1.2.1/cram/rANS_byte.h
external/samtools/htslib-1.2.1/cram/rANS_static.c
external/samtools/htslib-1.2.1/cram/rANS_static.h
external/samtools/htslib-1.2.1/cram/sam_header.c
external/samtools/htslib-1.2.1/cram/sam_header.h
external/samtools/htslib-1.2.1/cram/string_alloc.c
external/samtools/htslib-1.2.1/cram/string_alloc.h
external/samtools/htslib-1.2.1/cram/thread_pool.c
external/samtools/htslib-1.2.1/cram/thread_pool.h
external/samtools/htslib-1.2.1/cram/vlen.c
external/samtools/htslib-1.2.1/cram/vlen.h
external/samtools/htslib-1.2.1/cram/zfio.c
external/samtools/htslib-1.2.1/cram/zfio.h
external/samtools/htslib-1.2.1/htslib/bgzf.h
external/samtools/htslib-1.2.1/htslib/faidx.h
external/samtools/htslib-1.2.1/htslib/hfile.h
external/samtools/htslib-1.2.1/htslib/hts.h
external/samtools/htslib-1.2.1/htslib/hts_defs.h
external/samtools/htslib-1.2.1/htslib/kfunc.h
external/samtools/htslib-1.2.1/htslib/khash.h
external/samtools/htslib-1.2.1/htslib/khash_str2int.h
external/samtools/htslib-1.2.1/htslib/klist.h
external/samtools/htslib-1.2.1/htslib/knetfile.h
external/samtools/htslib-1.2.1/htslib/kseq.h
external/samtools/htslib-1.2.1/htslib/ksort.h
external/samtools/htslib-1.2.1/htslib/kstring.h
external/samtools/htslib-1.2.1/htslib/regidx.h
external/samtools/htslib-1.2.1/htslib/sam.h
external/samtools/htslib-1.2.1/htslib/synced_bcf_reader.h
external/samtools/htslib-1.2.1/htslib/tbx.h
external/samtools/htslib-1.2.1/htslib/vcf.h
external/samtools/htslib-1.2.1/htslib/vcf_sweep.h
external/samtools/htslib-1.2.1/htslib/vcfutils.h
external/samtools/win32/xcurses.h
external/samtools/win32/zconf.h
external/samtools/win32/zlib.h
external/ssw/encode.c
external/ssw/encode.h
external/ssw/ssw.c
external/ssw/ssw.h
test/test.py
transvar/__init__.py
transvar/anno.py
transvar/annodb.py
transvar/argparse.py
transvar/codonsearch.py
transvar/config.py
transvar/deletion.py
transvar/describe.py
transvar/err.py
transvar/faidx.py
transvar/frameshift.py
transvar/insertion.py
transvar/localdb.py
transvar/mnv.py
transvar/mutation.py
transvar/parser.py
transvar/proteinseqs.py
transvar/record.py
transvar/region.py
transvar/snv.py
transvar/sqlload.py
transvar/sqlmodel.py
transvar/transcripts.py
transvar/utils.py
transvar/version.py
transvar/ssw/__init__.py