LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
setup_tag.py
docs/Makefile
docs/conf.py
docs/dyconnmap.chronnectomics.rst
docs/dyconnmap.cluster.rst
docs/dyconnmap.fc.rst
docs/dyconnmap.graphs.rst
docs/dyconnmap.rst
docs/dyconnmap.sim_models.rst
docs/dyconnmap.ts.rst
docs/index.rst
docs/make.bat
docs/modules.rst
docs/pipeline1_poster.svg.png
docs/v2_pipeline.png
docs/_build/doctrees/dyconnmap.chronnectomics.doctree
docs/_build/doctrees/dyconnmap.cluster.doctree
docs/_build/doctrees/dyconnmap.doctree
docs/_build/doctrees/dyconnmap.fc.doctree
docs/_build/doctrees/dyconnmap.graphs.doctree
docs/_build/doctrees/dyconnmap.sim_models.doctree
docs/_build/doctrees/dyconnmap.ts.doctree
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/index.doctree
docs/_build/doctrees/modules.doctree
docs/_build/html/.buildinfo
docs/_build/html/dyconnmap.chronnectomics.html
docs/_build/html/dyconnmap.cluster.html
docs/_build/html/dyconnmap.fc.html
docs/_build/html/dyconnmap.graphs.html
docs/_build/html/dyconnmap.html
docs/_build/html/dyconnmap.sim_models.html
docs/_build/html/dyconnmap.ts.html
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/modules.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/_modules/index.html
docs/_build/html/_modules/dyconnmap/analytic_signal.html
docs/_build/html/_modules/dyconnmap/sliding_window.html
docs/_build/html/_modules/dyconnmap/tvfcgs.html
docs/_build/html/_modules/dyconnmap/chronnectomics/dwell_time.html
docs/_build/html/_modules/dyconnmap/chronnectomics/flexibility_index.html
docs/_build/html/_modules/dyconnmap/chronnectomics/occupancy_time.html
docs/_build/html/_modules/dyconnmap/cluster/cluster.html
docs/_build/html/_modules/dyconnmap/cluster/gng.html
docs/_build/html/_modules/dyconnmap/cluster/mng.html
docs/_build/html/_modules/dyconnmap/cluster/ng.html
docs/_build/html/_modules/dyconnmap/cluster/rng.html
docs/_build/html/_modules/dyconnmap/cluster/som.html
docs/_build/html/_modules/dyconnmap/cluster/umatrix.html
docs/_build/html/_modules/dyconnmap/cluster/validity.html
docs/_build/html/_modules/dyconnmap/fc/aec.html
docs/_build/html/_modules/dyconnmap/fc/biplv.html
docs/_build/html/_modules/dyconnmap/fc/coherence.html
docs/_build/html/_modules/dyconnmap/fc/corr.html
docs/_build/html/_modules/dyconnmap/fc/cos.html
docs/_build/html/_modules/dyconnmap/fc/crosscorr.html
docs/_build/html/_modules/dyconnmap/fc/dpli.html
docs/_build/html/_modules/dyconnmap/fc/esc.html
docs/_build/html/_modules/dyconnmap/fc/estimator.html
docs/_build/html/_modules/dyconnmap/fc/glm.html
docs/_build/html/_modules/dyconnmap/fc/icoherence.html
docs/_build/html/_modules/dyconnmap/fc/iplv.html
docs/_build/html/_modules/dyconnmap/fc/mui.html
docs/_build/html/_modules/dyconnmap/fc/nesc.html
docs/_build/html/_modules/dyconnmap/fc/pac.html
docs/_build/html/_modules/dyconnmap/fc/partcorr.html
docs/_build/html/_modules/dyconnmap/fc/pec.html
docs/_build/html/_modules/dyconnmap/fc/pli.html
docs/_build/html/_modules/dyconnmap/fc/plv.html
docs/_build/html/_modules/dyconnmap/fc/rho_index.html
docs/_build/html/_modules/dyconnmap/fc/wpli.html
docs/_build/html/_modules/dyconnmap/graphs/gdd.html
docs/_build/html/_modules/dyconnmap/graphs/imd.html
docs/_build/html/_modules/dyconnmap/graphs/laplacian_energy.html
docs/_build/html/_modules/dyconnmap/graphs/mi.html
docs/_build/html/_modules/dyconnmap/graphs/mpc.html
docs/_build/html/_modules/dyconnmap/graphs/nodal.html
docs/_build/html/_modules/dyconnmap/graphs/spectral_euclidean_distance.html
docs/_build/html/_modules/dyconnmap/graphs/spectral_k_distance.html
docs/_build/html/_modules/dyconnmap/graphs/threshold.html
docs/_build/html/_modules/dyconnmap/graphs/vi.html
docs/_build/html/_modules/dyconnmap/sim_models/makinen.html
docs/_build/html/_modules/dyconnmap/ts/ci.html
docs/_build/html/_modules/dyconnmap/ts/cv.html
docs/_build/html/_modules/dyconnmap/ts/dcorr.html
docs/_build/html/_modules/dyconnmap/ts/embed_delay.html
docs/_build/html/_modules/dyconnmap/ts/entropy.html
docs/_build/html/_modules/dyconnmap/ts/fisher_score.html
docs/_build/html/_modules/dyconnmap/ts/fisher_z.html
docs/_build/html/_modules/dyconnmap/ts/fnn.html
docs/_build/html/_modules/dyconnmap/ts/icc.html
docs/_build/html/_modules/dyconnmap/ts/markov_matrix.html
docs/_build/html/_modules/dyconnmap/ts/ordinal_pattern_similarity.html
docs/_build/html/_modules/dyconnmap/ts/permutation_entropy.html
docs/_build/html/_modules/dyconnmap/ts/rr_order_patterns.html
docs/_build/html/_modules/dyconnmap/ts/sampen.html
docs/_build/html/_modules/dyconnmap/ts/ste.html
docs/_build/html/_modules/dyconnmap/ts/surrogates.html
docs/_build/html/_modules/dyconnmap/ts/teager_kaiser_energy.html
docs/_build/html/_modules/dyconnmap/ts/wald.html
docs/_build/html/_sources/dyconnmap.chronnectomics.rst.txt
docs/_build/html/_sources/dyconnmap.cluster.rst.txt
docs/_build/html/_sources/dyconnmap.fc.rst.txt
docs/_build/html/_sources/dyconnmap.graphs.rst.txt
docs/_build/html/_sources/dyconnmap.rst.txt
docs/_build/html/_sources/dyconnmap.sim_models.rst.txt
docs/_build/html/_sources/dyconnmap.ts.rst.txt
docs/_build/html/_sources/index.rst.txt
docs/_build/html/_sources/modules.rst.txt
docs/_build/html/_static/basic.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/documentation_options.js
docs/_build/html/_static/file.png
docs/_build/html/_static/jquery-3.4.1.js
docs/_build/html/_static/jquery.js
docs/_build/html/_static/language_data.js
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/underscore-1.3.1.js
docs/_build/html/_static/underscore.js
docs/_build/html/_static/css/badge_only.css
docs/_build/html/_static/css/theme.css
docs/_build/html/_static/fonts/Inconsolata-Bold.ttf
docs/_build/html/_static/fonts/Inconsolata-Regular.ttf
docs/_build/html/_static/fonts/Inconsolata.ttf
docs/_build/html/_static/fonts/Lato-Bold.ttf
docs/_build/html/_static/fonts/Lato-Regular.ttf
docs/_build/html/_static/fonts/RobotoSlab-Bold.ttf
docs/_build/html/_static/fonts/RobotoSlab-Regular.ttf
docs/_build/html/_static/fonts/fontawesome-webfont.eot
docs/_build/html/_static/fonts/fontawesome-webfont.svg
docs/_build/html/_static/fonts/fontawesome-webfont.ttf
docs/_build/html/_static/fonts/fontawesome-webfont.woff
docs/_build/html/_static/fonts/fontawesome-webfont.woff2
docs/_build/html/_static/fonts/Lato/lato-bold.eot
docs/_build/html/_static/fonts/Lato/lato-bold.ttf
docs/_build/html/_static/fonts/Lato/lato-bold.woff
docs/_build/html/_static/fonts/Lato/lato-bold.woff2
docs/_build/html/_static/fonts/Lato/lato-bolditalic.eot
docs/_build/html/_static/fonts/Lato/lato-bolditalic.ttf
docs/_build/html/_static/fonts/Lato/lato-bolditalic.woff
docs/_build/html/_static/fonts/Lato/lato-bolditalic.woff2
docs/_build/html/_static/fonts/Lato/lato-italic.eot
docs/_build/html/_static/fonts/Lato/lato-italic.ttf
docs/_build/html/_static/fonts/Lato/lato-italic.woff
docs/_build/html/_static/fonts/Lato/lato-italic.woff2
docs/_build/html/_static/fonts/Lato/lato-regular.eot
docs/_build/html/_static/fonts/Lato/lato-regular.ttf
docs/_build/html/_static/fonts/Lato/lato-regular.woff
docs/_build/html/_static/fonts/Lato/lato-regular.woff2
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff
docs/_build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2
docs/_build/html/_static/js/modernizr.min.js
docs/_build/html/_static/js/theme.js
docs/_templates/class.rst
docs/_templates/class_with_call.rst
docs/sphinxext/LICENSE.txt
docs/sphinxext/MANIFEST.in
docs/sphinxext/README.txt
docs/sphinxext/gen_rst.py
docs/sphinxext/github_link.py
docs/sphinxext/numpy_ext/__init__.py
docs/sphinxext/numpy_ext/docscrape.py
docs/sphinxext/numpy_ext/docscrape_sphinx.py
docs/sphinxext/numpy_ext/numpydoc.py
docs/sphinxext/numpy_ext/__pycache__/__init__.cpython-37.pyc
docs/sphinxext/numpy_ext/__pycache__/docscrape.cpython-37.pyc
docs/sphinxext/numpy_ext/__pycache__/docscrape_sphinx.cpython-37.pyc
docs/sphinxext/numpy_ext/__pycache__/numpydoc.cpython-37.pyc
dyconnmap/__init__.py
dyconnmap/analytic_signal.py
dyconnmap/bands.py
dyconnmap/sliding_window.py
dyconnmap/tvfcgs.py
dyconnmap.egg-info/PKG-INFO
dyconnmap.egg-info/SOURCES.txt
dyconnmap.egg-info/dependency_links.txt
dyconnmap.egg-info/requires.txt
dyconnmap.egg-info/top_level.txt
dyconnmap/chronnectomics/__init__.py
dyconnmap/chronnectomics/dwell_time.py
dyconnmap/chronnectomics/flexibility_index.py
dyconnmap/chronnectomics/occupancy_time.py
dyconnmap/cluster/__init__.py
dyconnmap/cluster/cluster.py
dyconnmap/cluster/gng.py
dyconnmap/cluster/mng.py
dyconnmap/cluster/ng.py
dyconnmap/cluster/rng.py
dyconnmap/cluster/som.py
dyconnmap/cluster/umatrix.py
dyconnmap/cluster/validity.py
dyconnmap/fc/__init__.py
dyconnmap/fc/aec.py
dyconnmap/fc/biplv.py
dyconnmap/fc/coherence.py
dyconnmap/fc/corr.py
dyconnmap/fc/cos.py
dyconnmap/fc/crosscorr.py
dyconnmap/fc/dpli.py
dyconnmap/fc/esc.py
dyconnmap/fc/estimator.py
dyconnmap/fc/glm.py
dyconnmap/fc/icoherence.py
dyconnmap/fc/iplv.py
dyconnmap/fc/mui.py
dyconnmap/fc/nesc.py
dyconnmap/fc/pac.py
dyconnmap/fc/partcorr.py
dyconnmap/fc/pec.py
dyconnmap/fc/pli.py
dyconnmap/fc/plv.py
dyconnmap/fc/rho_index.py
dyconnmap/fc/wpli.py
dyconnmap/graphs/__init__.py
dyconnmap/graphs/gdd.py
dyconnmap/graphs/imd.py
dyconnmap/graphs/laplacian_energy.py
dyconnmap/graphs/mi.py
dyconnmap/graphs/mpc.py
dyconnmap/graphs/nodal.py
dyconnmap/graphs/spectral_euclidean_distance.py
dyconnmap/graphs/spectral_k_distance.py
dyconnmap/graphs/threshold.py
dyconnmap/graphs/vi.py
dyconnmap/sim_models/__init__.py
dyconnmap/sim_models/makinen.py
dyconnmap/ts/__init__.py
dyconnmap/ts/ci.py
dyconnmap/ts/cv.py
dyconnmap/ts/dcorr.py
dyconnmap/ts/embed_delay.py
dyconnmap/ts/entropy.py
dyconnmap/ts/fisher_score.py
dyconnmap/ts/fisher_z.py
dyconnmap/ts/fnn.py
dyconnmap/ts/icc.py
dyconnmap/ts/markov_matrix.py
dyconnmap/ts/ordinal_pattern_similarity.py
dyconnmap/ts/permutation_entropy.py
dyconnmap/ts/rr_order_patterns.py
dyconnmap/ts/sampen.py
dyconnmap/ts/ste.py
dyconnmap/ts/surrogates.py
dyconnmap/ts/teager_kaiser_energy.py
dyconnmap/ts/wald.py
examples/cluster_ng.py
examples/cluster_som.py
examples/fc_aec.py
examples/fc_coherence.py
examples/fc_corr.py
examples/fc_dpli.py
examples/fc_esc.py
examples/fc_glm.py
examples/fc_iplv.py
examples/fc_mi.py
examples/fc_mui.py
examples/fc_nesc.py
examples/fc_pac.py
examples/fc_pec.py
examples/fc_pli.py
examples/fc_plv.py
examples/fc_si.py
examples/fc_sl.py
examples/fc_wpli.py
examples/fcmicrostates.py
examples/graphs_gdd.py
examples/graphs_mi.py
examples/graphs_nodal.py
examples/graphs_vi.py
examples/microstates.py
examples/modwt.py
examples/python_comodulogram.py
examples/python_mp.py
examples/python_phasesync_user-defined_estimator.py
examples/python_try_new_class_system.py
examples/sim_models_maniken.py
examples/sliding_window1.py
examples/ts_ci.py
examples/ts_embed_delay.py
examples/ts_markov_matrix.py
examples/ts_sampen.py
examples/ts_surrogates.py
examples/ts_teager_kaiser_operator.py
examples/ts_wald.py
examples/tvfcgs.py
examples/tvfcgs_corr.py
examples/tvfcgs_icoh.py
examples/data/10secs.mat
examples/data/chronnectomics_sts.npy
examples/data/eeg_32chans_10secs.npy
examples/data/random_timeseries.npy
examples/data/rois39_samples100.npy
examples/data/ts_lorenz.npy
examples/data/wald_test_ts.npy
tests/.coverage
tests/__init__.py
tests/codacy-coverage.json
tests/coverage.xml
tests/test_chronnectomics.py
tests/test_clustering.py
tests/test_clustering_validity.py
tests/test_fc.py
tests/test_graphs.py
tests/test_graphs_threshold.py
tests/test_sliding_window.py
tests/test_ts.py
tests/test_tvfcgs.py
tests/.codacy-coverage/codacy-coverage-reporter
tests/__pycache__/__init__.cpython-37.pyc
tests/__pycache__/test_chronnectomics.cpython-37.pyc
tests/__pycache__/test_clustering.cpython-37.pyc
tests/__pycache__/test_clustering_validity.cpython-37.pyc
tests/__pycache__/test_fc.cpython-37.pyc
tests/__pycache__/test_graphs.cpython-37.pyc
tests/__pycache__/test_graphs_threshold.cpython-37.pyc
tests/__pycache__/test_sliding_window.cpython-37.pyc
tests/__pycache__/test_ts.cpython-37.pyc
tests/__pycache__/test_tvfcgs.cpython-37.pyc
tests/data/.directory
tests/data/chronnectomics_dwell_mean.npy
tests/data/chronnectomics_dwell_std.npy
tests/data/chronnectomics_dwell_time.npy
tests/data/chronnectomics_flexibility_index.npy
tests/data/chronnectomics_occupancy_time.npy
tests/data/test_aec.npy
tests/data/test_cluster_validity_data.npy
tests/data/test_cluster_validity_davies_bouldin.npy
tests/data/test_cluster_validity_ray_turi.npy
tests/data/test_cluster_validity_ray_turi_with_missing_labels.npy
tests/data/test_cluster_validity_symbols.npy
tests/data/test_clustering_gng_protos.npy
tests/data/test_clustering_gng_symbols.npy
tests/data/test_clustering_mng_protos.npy
tests/data/test_clustering_ng_protos.npy
tests/data/test_clustering_ng_symbols.npy
tests/data/test_clustering_rng_protos.npy
tests/data/test_clustering_rng_symbols.npy
tests/data/test_clustering_som_protos.npy
tests/data/test_clustering_som_umatrix.npy
tests/data/test_coherence.npy
tests/data/test_corr.npy
tests/data/test_cos.npy
tests/data/test_cos_nofilter.npy
tests/data/test_crosscorr.npy
tests/data/test_dpli.npy
tests/data/test_dwpli.npy
tests/data/test_esc.npy
tests/data/test_glm_avg.npy
tests/data/test_glm_ts.npy
tests/data/test_graphs_gdd_mtx1_5x5.npy
tests/data/test_graphs_gdd_mtx2_5x5.npy
tests/data/test_graphs_inv_mtx.npy
tests/data/test_graphs_k_cores.npy
tests/data/test_graphs_nodal_global_efficiency.npy
tests/data/test_graphs_spectral_mtx1_10x10.npy
tests/data/test_graphs_spectral_mtx2_10x10.npy
tests/data/test_graphs_threshold_eco_binary.npy
tests/data/test_graphs_threshold_eco_filtered.npy
tests/data/test_graphs_threshold_gce.npy
tests/data/test_graphs_threshold_graph.npy
tests/data/test_graphs_threshold_graph2.npy
tests/data/test_graphs_threshold_graph_binary.npy
tests/data/test_graphs_threshold_mean_degree.npy
tests/data/test_graphs_threshold_mst_mean_degree.npy
tests/data/test_graphs_threshold_omst_gce.npy
tests/data/test_graphs_threshold_shortest_paths.npy
tests/data/test_graphs_vi_mtx1_30x30.npy
tests/data/test_graphs_vi_mtx1_30x30_comm_struct.npy
tests/data/test_graphs_vi_mtx2_30x30.npy
tests/data/test_graphs_vi_mtx2_30x30_comm_struct.npy
tests/data/test_icoherence.npy
tests/data/test_iplv_avg.npy
tests/data/test_iplv_nofilter_avg.npy
tests/data/test_iplv_nofilter_ts.npy
tests/data/test_iplv_ts.npy
tests/data/test_mi_avg.npy
tests/data/test_mi_ts.npy
tests/data/test_mlgraph.npy
tests/data/test_mlgraph_mst.npy
tests/data/test_mlgraph_mst_pc_degree.npy
tests/data/test_mlgraph_pc_gamma.npy
tests/data/test_mlgraph_pc_strength.npy
tests/data/test_nesc.npy
tests/data/test_pac_plv_avg.npy
tests/data/test_pac_plv_ts.npy
tests/data/test_partcorr.npy
tests/data/test_pec.npy
tests/data/test_pli_avg.npy
tests/data/test_pli_ts.npy
tests/data/test_plv_avg.npy
tests/data/test_plv_ts.npy
tests/data/test_rho_index.npy
tests/data/test_sliding_indices1.npy
tests/data/test_sliding_indices3.npy
tests/data/test_sliding_indices6.npy
tests/data/test_sliding_window.npy
tests/data/test_ts_afft.npy
tests/data/test_ts_ci_complexity_index.npy
tests/data/test_ts_ci_spectrum.npy
tests/data/test_ts_ci_ts.npy
tests/data/test_ts_cstr.npy
tests/data/test_ts_dissimilarity.npy
tests/data/test_ts_embedded_ts.npy
tests/data/test_ts_fnn.npy
tests/data/test_ts_markov_oc.npy
tests/data/test_ts_markov_tr.npy
tests/data/test_ts_n_permutation_entropy.npy
tests/data/test_ts_ordinal_patterns.npy
tests/data/test_ts_patterns_distribution.npy
tests/data/test_ts_permutation_entropy.npy
tests/data/test_ts_phase_rand.npy
tests/data/test_ts_surrogates.npy
tests/data/test_ts_surrogates2.npy
tests/data/test_ts_surrogates2_fdr_h.npy
tests/data/test_ts_surrogates2_p_val.npy
tests/data/test_ts_surrogates_corr.npy
tests/data/test_ts_surrogates_fdr_crit_p.npy
tests/data/test_ts_surrogates_fdr_h.npy
tests/data/test_ts_surrogates_p_val.npy
tests/data/test_tvfcgs_compute_windows_window_length.npy
tests/data/test_tvfcgs_compute_windows_windows.npy
tests/data/test_tvfcgs_from_plv_ts.npy
tests/data/test_tvfcgs_pac_plv.npy
tests/data/test_tvfcgs_plv.npy
tests/data/test_wpli.npy
tests/data/ts_markov_chain.npy
tests/data/ts_tko.npy