[console_scripts]
add-mygene-info-to-orfs = pbiotools.utils.pgrms.add_mygene_info_to_orfs:main
bam-to-wiggle = pbiotools.utils.pgrms.bam_to_wiggle:main
bed12-to-gtf = pbiotools.utils.pgrms.bed12_to_gtf:main
bedx-to-bedy = pbiotools.utils.pgrms.bedx_to_bedy:main
convert-ccds-to-bed = pbiotools.utils.pgrms.convert_ccds_to_bed:main
count-aligned-reads = pbiotools.utils.pgrms.count_aligned_reads:main
count-reads = pbiotools.utils.pgrms.count_reads:main
create-mygene-report = pbiotools.utils.pgrms.create_mygene_report:main
dna-to-aa = pbiotools.utils.pgrms.dna_to_aa:main
download-srr-files = pbiotools.utils.pgrms.download_srr_files:main
extract-bed-sequences = pbiotools.utils.pgrms.extract_bed_sequences:main
extract-cds-coordinates = pbiotools.utils.pgrms.extract_cds_coordinates:main
fasta-to-fastq = pbiotools.utils.pgrms.fasta_to_fastq:main
fastq-pe-dedupe = pbiotools.utils.pgrms.fastq_pe_dedupe:main
filter-bam-by-ids = pbiotools.utils.pgrms.filter_bam_by_ids:main
fix-all-bed-files = pbiotools.utils.pgrms.fix_all_bed_files:main
get-all-utrs = pbiotools.utils.pgrms.get_all_utrs:main
get-read-length-distribution = pbiotools.utils.pgrms.get_read_length_distribution:main
gtf-to-bed12 = pbiotools.utils.pgrms.gtf_to_bed12:main
join-long-chromosomes = pbiotools.utils.pgrms.join_long_chromosomes:main
merge-isoforms = pbiotools.utils.pgrms.merge_isoforms:main
remove-duplicate-bed-entries = pbiotools.utils.pgrms.remove_duplicate_bed_entries:main
remove-duplicate-sequences = pbiotools.utils.pgrms.remove_duplicate_sequences:main
remove-multimapping-reads = pbiotools.utils.pgrms.remove_multimapping_reads:main
reorder-fasta = pbiotools.utils.pgrms.reorder_fasta:main
run-bowtie = pbiotools.utils.pgrms.run_bowtie:main
run-signalp = pbiotools.utils.pgrms.run_signalp:main
run-tmhmm = pbiotools.utils.pgrms.run_tmhmm:main
split-bed12-blocks = pbiotools.utils.pgrms.split_bed12_blocks:main
split-long-chromosomes = pbiotools.utils.pgrms.split_long_chromosomes:main
subtract-bed = pbiotools.utils.pgrms.subtract_bed:main
