FROM python:3.7

RUN apt-get update && \
    apt-get install -y wget curl

RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda.sh
RUN bash ~/miniconda.sh -b -p ./miniconda
ENV PATH="/miniconda/bin:$PATH"

COPY . /pollock
WORKDIR /pollock

RUN pip install .

RUN pollock-setup from_seurat

CMD /bin/bash
