Metadata-Version: 2.1
Name: pyphase
Version: 1.0.0
Summary: An open source phase retrieval code
Home-page: https://gitlab.in2p3.fr/mlanger/pyPhase/
Author: Max Langer
Author-email: max.langer@creatis.insa-lyon.fr
License: CeCILL FREE SOFTWARE LICENSE AGREEMENT
Description: **pyPhase** is an open-source Python package for phase retrieval from phase contrast images in the Fresnel regime. For an overview, check out the pyPhase manuscript: https://arxiv.org/abs/2012.07942
        
        Features
        ========
        
        * Phase retrieval algorithms
        * Wave propagation.
        * Handling of different image sources and formats
        * Tools for pre-processing such as registration of phase contrast images and motion estimation
        
        Installation
        ============
        
        Installation is currently through PyPI. Create a virtual environment using your favourite virtual environment manager, verify that pip is installed, then:
        
        .. code-block::
        
           pip install pyphase
        
        
        PyPhase currently requires Elastix 4.9 installed for registration. 
        To manually install elastix 4.9 go to https://elastix.lumc.nl/download.php
        
        * Unzip the archive.
        * Add the path for elastix/bin to your .bashrc: add YOUR_PATH_TO_elastix/bin to your environment variable PATH.
        * Add the path for elastix/lib to your .bashrc: add YOUR_PATH_TO_elastix/lib to your environment variable LD_LIBRARY_PATH.
        
        Test your installation:
        
        .. code-block::
        
            python3 import pyphase
        
        
        
        
        
        
        
        
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