Metadata-Version: 2.1
Name: bamsnap
Version: 0.2.10
Summary: A converter from .bam to .png for specific genomic region.
Home-page: https://github.com/danielmsk/bamsnap
Author: Daniel Minseok Kwon
Author-email: daniel.minseok.kwon@gmail.com
License: MIT
Download-URL: https://github.com/danielmsk/bamsnap/archive/0.1.tar.gz
Description: # BamSnap
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        BAMSNAP is high-performed command-based visualization tool for the aligned BAM file.
        
        <!--<img src="https://raw.githubusercontent.com/parklab/bamsnap/master/data/ex1/snapfiles/snap_test11.bam_1_715347-715348.png" height=128px width=405px>-->
        
        For more details, see BamSnap [**Documentation**](http://bamsnap.readthedocs.io/en/latest).
        
        [<img src="https://img.shields.io/pypi/v/bamsnap.svg">](https://pypi.org/project/bamsnap/)
        [<img src="https://img.shields.io/pypi/dm/bamsnap.svg">](https://pypi.org/project/bamsnap/)
        [<img src="https://readthedocs.org/projects/bamsnap/badge/?version=latest">](https://bamsnap.readthedocs.io/)
        
        ## Installation
        
        ### Prerequisites
        * python 3.4+
        * [Pillow (Python Imaging Library)](https://pypi.org/project/Pillow/)
        * [pysam](https://pypi.org/project/pysam/)
        * [pyfaidx](https://pypi.org/project/pyfaidx/)
        * [pytabix](https://pypi.org/project/pytabix/)
        
        ### Install with pip
        
        ```bash
        pip install bamsnap
        ```
        * [pypi site for bamsnap](https://pypi.org/project/bamsnap/)
        
        ### Install with github
        
        ```
        git clone https://github.com/parklab/bamsnap
        cd bamsnap
        python setup.py install
        ```
        
        ## Usage
        
        ### Simple usage
        ```bash
        $ bamsnap -bam test.bam -pos 1:7364529 -out test.png
        ```
        
        For more details, see BamSnap [**Documentation**](http://bamsnap.readthedocs.io/en/latest).
        
        
        ## Example Use Case
        
        * [**1000 Genome Data**](http://100.26.138.46:8000/): 1000 genomic loci in 2504 individuals
        * [**BamSnap Plot Gallery**](https://bamsnap.readthedocs.io/en/latest/gallery.html)
        
        
        
        
        
        
Keywords: genomics,bioinformatics
Platform: UNKNOWN
Classifier: Operating System :: OS Independent
Classifier: Topic :: Software Development :: Libraries
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Description-Content-Type: text/markdown
