Metadata-Version: 1.1
Name: troppo
Version: 0.0.5
Summary: TROPPO - Tissue-specific RecOnstruction and Phenotype Prediction using Omics data
Home-page: https://github.com/BioSystemsUM/troppo
Author: Jorge Ferreira & Vítor Vieira
Author-email: jorge.ferreira@ceb.uminho.pt,vvieira@ceb.uminho.pt
License: GNU General Public License v3.0
Description: |License| |PyPI version|
        
        TROPPO
        ============
        
        *Troppo* (Tissue-specific RecOnstruction and Phenotype Prediction using Omics data) is a Python package containing methods
        for tissue specific reconstruction to use with constraint-based models. The main purpose of this package is to provide
        an open-source framework which is both modular and flexible to be integrated with other packages, such as cobrapy, framed
        or cameo whose already provide generic data structures to interpret metabolic models.
        
        A (MI)LP solver is required to use most of the present methods. The current methods support optlang, which in turn allow
        the use of solvers like CPLEX or Gurobi.
        
        The current methods implemented are:
            - FastCORE
            - CORDA
            - GIMME
            - (t)INIT
            - iMAT
        
        Methods to be implemented later:
            - MBA
            - mCADRE
            - PRIME
        
        Documentation
        ~~~~~~~~~~~~~
        
        
        
        Instalation from PyPI (stable releases)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install troppo
        
        Instalation from github (latest development release)
        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
        
        ::
        
            pip install https://github.com/BioSystemsUM/troppo
        
        Credits and License
        ~~~~~~~~~~~~~~~~~~~
        
        Developed at the Centre of Biological Engineering, University of Minho
        
        Released under the GNU Public License (version 3.0).
        
        
        .. |License| image:: https://img.shields.io/badge/license-GPL%20v3.0-blue.svg
           :target: https://opensource.org/licenses/GPL-3.0
        .. |PyPI version| image:: https://badge.fury.io/py/troppo.svg
           :target: https://badge.fury.io/py/troppo
Keywords: pathway analysis metabolic model
Platform: UNKNOWN
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Intended Audience :: Science/Research
Classifier: Programming Language :: Python :: 3.5
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Topic :: Software Development :: Libraries :: Python Modules
