CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
cvapipe_analysis/__init__.py
cvapipe_analysis/constants.py
cvapipe_analysis/exceptions.py
cvapipe_analysis.egg-info/PKG-INFO
cvapipe_analysis.egg-info/SOURCES.txt
cvapipe_analysis.egg-info/dependency_links.txt
cvapipe_analysis.egg-info/entry_points.txt
cvapipe_analysis.egg-info/not-zip-safe
cvapipe_analysis.egg-info/requires.txt
cvapipe_analysis.egg-info/top_level.txt
cvapipe_analysis/bin/__init__.py
cvapipe_analysis/bin/all.py
cvapipe_analysis/bin/cli.py
cvapipe_analysis/steps/__init__.py
cvapipe_analysis/steps/aggregation/__init__.py
cvapipe_analysis/steps/aggregation/aggregation.py
cvapipe_analysis/steps/aggregation/aggregation_tools.py
cvapipe_analysis/steps/cellpack/__init__.py
cvapipe_analysis/steps/cellpack/cellpack.py
cvapipe_analysis/steps/cellpack/cellpack_tools.py
cvapipe_analysis/steps/compute_features/__init__.py
cvapipe_analysis/steps/compute_features/compute_features.py
cvapipe_analysis/steps/compute_features/compute_features_tools.py
cvapipe_analysis/steps/concordance/__init__.py
cvapipe_analysis/steps/concordance/concordance.py
cvapipe_analysis/steps/concordance/concordance_tools.py
cvapipe_analysis/steps/correlation/__init__.py
cvapipe_analysis/steps/correlation/correlation.py
cvapipe_analysis/steps/correlation/correlation_tools.py
cvapipe_analysis/steps/load_data/__init__.py
cvapipe_analysis/steps/load_data/load_data.py
cvapipe_analysis/steps/load_data/load_data_tools.py
cvapipe_analysis/steps/multi_res_struct_compare/__init__.py
cvapipe_analysis/steps/multi_res_struct_compare/constants.py
cvapipe_analysis/steps/multi_res_struct_compare/exceptions.py
cvapipe_analysis/steps/multi_res_struct_compare/multi_res_struct_compare.py
cvapipe_analysis/steps/multi_res_struct_compare/utils.py
cvapipe_analysis/steps/parameterization/__init__.py
cvapipe_analysis/steps/parameterization/parameterization.py
cvapipe_analysis/steps/parameterization/parameterization_tools.py
cvapipe_analysis/steps/pca_path_cells/__init__.py
cvapipe_analysis/steps/pca_path_cells/pca_path_cells.py
cvapipe_analysis/steps/pca_path_cells/utils.py
cvapipe_analysis/steps/preprocessing/__init__.py
cvapipe_analysis/steps/preprocessing/filtering_tools.py
cvapipe_analysis/steps/preprocessing/outliers_tools.py
cvapipe_analysis/steps/preprocessing/preprocessing.py
cvapipe_analysis/steps/shapemode/__init__.py
cvapipe_analysis/steps/shapemode/avgshape.py
cvapipe_analysis/steps/shapemode/dim_reduction.py
cvapipe_analysis/steps/shapemode/outliers.py
cvapipe_analysis/steps/shapemode/plotting.py
cvapipe_analysis/steps/shapemode/shapemode.py
cvapipe_analysis/steps/shapemode/shapemode_tools.py
cvapipe_analysis/steps/stereotypy/__init__.py
cvapipe_analysis/steps/stereotypy/stereotypy.py
cvapipe_analysis/steps/stereotypy/stereotypy_tools.py
cvapipe_analysis/tools/__init__.py
cvapipe_analysis/tools/cluster.py
cvapipe_analysis/tools/controller.py
cvapipe_analysis/tools/general.py
cvapipe_analysis/tools/io.py
cvapipe_analysis/tools/plotting.py
cvapipe_analysis/tools/setup.py
cvapipe_analysis/tools/shapespace.py
cvapipe_analysis/tools/viz.py
docs/Makefile
docs/conf.py
docs/contributing.rst
docs/index.rst
docs/installation.rst
docs/logo.png
docs/make.bat