# start snippet triangular basic
fancplot chr18:6mb-10mb -p triangular output/hic/binned/fanc_example_50kb.hic
# end snippet triangular basic
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example.png chr18:6mb-10mb -p triangular output/hic/binned/fanc_example_50kb.hic

# start snippet triangular truncated
fancplot chr18:6mb-10mb -p triangular -m 2mb -vmax 0.05 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular truncated
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_truncated.png chr18:6mb-10mb -p triangular -m 2mb -vmax 0.05 output/hic/binned/fanc_example_50kb.hic

# start snippet triangular range
fancplot chr18:6mb-10mb -p triangular -r output/hic/binned/fanc_example_50kb.hic
# end snippet triangular range
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_range.png chr18:6mb-10mb -p triangular -r output/hic/binned/fanc_example_50kb.hic

# start snippet triangular vminvmax
fancplot chr18:6mb-10mb -p triangular -vmin 0 -vmax 0.03 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular vminvmax
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_vminvmax.png chr18:6mb-10mb -p triangular -vmin 0 -vmax 0.03 output/hic/binned/fanc_example_50kb.hic

# start snippet triangular log
fancplot chr18:6mb-10mb -p triangular -l -vmax 0.05 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular log
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_log.png chr18:6mb-10mb -p triangular -l -vmax 0.05 output/hic/binned/fanc_example_50kb.hic

# start snippet triangular colormap
fancplot chr18:6mb-10mb -p triangular -c Greens -vmax 0.05 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular colormap
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_colormap.png chr18:6mb-10mb -p triangular -c Greens -vmax 0.05 output/hic/binned/fanc_example_50kb.hic


# start snippet triangular nonorm
fancplot chr18:6mb-10mb -p triangular -u -vmax 30 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular nonorm
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_nonorm.png chr18:6mb-10mb -p triangular -u -vmax 30 output/hic/binned/fanc_example_50kb.hic

# start snippet triangular oe
fancplot chr18:6mb-10mb -p triangular -e -vmin -3 -vmax 3 output/hic/binned/fanc_example_50kb.hic
# end snippet triangular oe
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_oe.png chr18:6mb-10mb -p triangular -e -vmin -3 -vmax 3 output/hic/binned/fanc_example_50kb.hic


# start snippet square basic
fancplot chr18:6mb-10mb -p square -vmax 0.05 output/hic/binned/fanc_example_50kb.hic
# end snippet square basic
fancplot -o ../docsrc/fancplot-executable/images/fancplot_square_example.png chr18:6mb-10mb -p square -vmax 0.05 output/hic/binned/fanc_example_50kb.hic

# start snippet square flip
fancplot chr18:6mb-10mb -p square -f output/hic/binned/fanc_example_50kb.hic
# end snippet square flip
fancplot -o ../docsrc/fancplot-executable/images/fancplot_square_example_flip.png chr18:6mb-10mb -p square -f output/hic/binned/fanc_example_50kb.hic

# start snippet mirror basic
fancplot chr18:6mb-10mb -p mirror -d 3mb output/hic/binned/fanc_example_50kb.hic output/hic/binned/fanc_example_100kb.hic
# end snippet mirror basic
fancplot -o ../docsrc/fancplot-executable/images/fancplot_square_example_mirror.png chr18:6mb-10mb -p mirror -d 3mb output/hic/binned/fanc_example_50kb.hic output/hic/binned/fanc_example_100kb.hic

# start snippet mirror oe
fancplot chr18:6mb-10mb -p mirror -d 3mb -le -lvmin -2 -lvmax 2 output/hic/binned/fanc_example_50kb.hic output/hic/binned/fanc_example_50kb.hic
# end snippet mirror oe
fancplot -o ../docsrc/fancplot-executable/images/fancplot_square_example_mirror_oe.png chr18:6mb-10mb -p mirror -d 3mb -le -lvmin -2 -lvmax 2 output/hic/binned/fanc_example_50kb.hic output/hic/binned/fanc_example_50kb.hic


