# start snippet fancplot regions
# single region
fancplot chr18:6mb-10mb

# multiple regions
fancplot chr18:12000000-14000000 chr18:6.5mb-10mb

# BED file
fancplot /path/to/file.bed
# end snippet fancplot regions

# start snippet fancplot window
fancplot -w 1mb /path/to/chipseq.narrowPeak
# end snippet fancplot window

# start snippet fancplot file
fancplot -o /path/to/plot.png chr18:6mb-10mb
# end snippet fancplot file

# start snippet fancplot panel
fancplot chr18:6mb-10mb -p triangular
# end snippet fancplot panel

# start snippet fancplot triangular example
fancplot chr18:6mb-10mb -p triangular output/hic/binned/fanc_example_50kb.hic
# end snippet fancplot triangular example
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example.png chr18:6mb-10mb -p triangular output/hic/binned/fanc_example_50kb.hic

# start snippet fancplot triangular custom ticks
fancplot chr18:6mb-10mb --tick-locations 8mb 10mb -p triangular output/hic/binned/fanc_example_50kb.hic
# end snippet fancplot triangular custom ticks
fancplot -o ../docsrc/fancplot-executable/images/fancplot_triangular_example_custom_ticks.png chr18:6mb-10mb --tick-locations 8mb 10mb -p triangular -vmax 0.04 output/hic/binned/fanc_example_50kb.hic


# start snippet fancplot panel help
fancplot chr18:6mb-10mb -p triangular -h
# end snippet fancplot panel help