CHANGELOG.md
LICENSE
MANIFEST.in
README.md
makefile
pyproject.toml
run.sh
setup.cfg
setup.py
goatools/.gitignore
goatools/__init__.py
goatools/associations.py
goatools/base.py
goatools/evidence_codes.py
goatools/go_enrichment.py
goatools/go_search.py
goatools/godag_obosm.py
goatools/godag_plot.py
goatools/godag_small.py
goatools/mapslim.py
goatools/multiple_testing.py
goatools/nt_utils.py
goatools/obo_parser.py
goatools/obo_tasks.py
goatools/pvalcalc.py
goatools/randseed.py
goatools/ratio.py
goatools/semantic.py
goatools/statsdescribe.py
goatools/utils.py
goatools/version.py
goatools/wr_tbl.py
goatools/wr_tbl_class.py
goatools.egg-info/PKG-INFO
goatools.egg-info/SOURCES.txt
goatools.egg-info/dependency_links.txt
goatools.egg-info/requires.txt
goatools.egg-info/top_level.txt
goatools/anno/__init__.py
goatools/anno/annoreader_base.py
goatools/anno/broad_gos.py
goatools/anno/dnld_ebi_goa.py
goatools/anno/eco2group.py
goatools/anno/factory.py
goatools/anno/gaf_reader.py
goatools/anno/genetogo_reader.py
goatools/anno/gpad_reader.py
goatools/anno/idtogos_reader.py
goatools/anno/opts.py
goatools/anno/update_association.py
goatools/anno/extensions/__init__.py
goatools/anno/extensions/extension.py
goatools/anno/extensions/extensions.py
goatools/anno/extensions/factory.py
goatools/anno/init/__init__.py
goatools/anno/init/reader_gaf.py
goatools/anno/init/reader_genetogo.py
goatools/anno/init/reader_gpad.py
goatools/anno/init/reader_idtogos.py
goatools/anno/init/utils.py
goatools/cli/__init__.py
goatools/cli/compare_gos.py
goatools/cli/docopt_parse.py
goatools/cli/find_enrichment.py
goatools/cli/gos_get.py
goatools/cli/gosubdag_plot.py
goatools/cli/grouped.py
goatools/cli/ncbi_gene_results_to_python.py
goatools/cli/prt_terms.py
goatools/cli/wr_hierarchy.py
goatools/cli/wr_sections.py
goatools/godag/__init__.py
goatools/godag/consts.py
goatools/godag/go_tasks.py
goatools/godag/obo_optional_attributes.py
goatools/godag/prtfncs.py
goatools/godag/prttime.py
goatools/godag/relationship_combos.py
goatools/godag/relationship_str.py
goatools/godag/reldepth.py
goatools/godag/typedef.py
goatools/goea/__init__.py
goatools/goea/go_enrichment_ns.py
goatools/gosubdag/__init__.py
goatools/gosubdag/go_edges.py
goatools/gosubdag/go_most_specific.py
goatools/gosubdag/go_paths.py
goatools/gosubdag/go_tasks.py
goatools/gosubdag/godag_rcnt.py
goatools/gosubdag/godag_rcnt_init.py
goatools/gosubdag/gosubdag.py
goatools/gosubdag/gosubdag_init.py
goatools/gosubdag/utils.py
goatools/gosubdag/plot/__init__.py
goatools/gosubdag/plot/go2color.py
goatools/gosubdag/plot/go_edge.py
goatools/gosubdag/plot/go_name_shorten.py
goatools/gosubdag/plot/go_node.py
goatools/gosubdag/plot/goea_results.py
goatools/gosubdag/plot/gosubdag_plot.py
goatools/gosubdag/plot/plot.py
goatools/gosubdag/rpt/__init__.py
goatools/gosubdag/rpt/wr_xlsx.py
goatools/gosubdag/rpt/write_hierarchy.py
goatools/grouper/__init__.py
goatools/grouper/aart_geneproducts_all.py
goatools/grouper/aart_geneproducts_one.py
goatools/grouper/colors.py
goatools/grouper/grprdflts.py
goatools/grouper/grprobj.py
goatools/grouper/grprobj_init.py
goatools/grouper/grprplt.py
goatools/grouper/hdrgos.py
goatools/grouper/plotobj.py
goatools/grouper/read_goids.py
goatools/grouper/sorter.py
goatools/grouper/sorter_gos.py
goatools/grouper/sorter_nts.py
goatools/grouper/tasks.py
goatools/grouper/utils.py
goatools/grouper/wr_sections.py
goatools/grouper/wrxlsx.py
goatools/parsers/__init__.py
goatools/parsers/david_chart.py
goatools/parsers/ncbi_gene_file_reader.py
goatools/rpt/__init__.py
goatools/rpt/goea_nt_xfrm.py
goatools/rpt/nts_xfrm.py
goatools/rpt/prtfmt.py
goatools/rpt/rpt_lev_depth.py
goatools/rpt/write_hierarchy_base.py
goatools/semsim/__init__.py
goatools/semsim/termwise/__init__.py
goatools/semsim/termwise/dag_a.py
goatools/semsim/termwise/wang.py
goatools/test_data/__init__.py
goatools/test_data/checks.py
goatools/test_data/gafs.py
goatools/test_data/genes_NCBI_10090_All.py
goatools/test_data/genes_NCBI_10090_ProteinCoding.py
goatools/test_data/genes_NCBI_7227_ProteinCoding.py
goatools/test_data/genes_NCBI_9606_All.py
goatools/test_data/genes_NCBI_9606_ProteinCoding.py
goatools/test_data/gjoneska_2015_ensmusg2symbol.py
goatools/test_data/gjoneska_goea_consistent_decrease.py
goatools/test_data/gjoneska_goea_consistent_increase.py
goatools/test_data/gjoneska_goea_late_decrease.py
goatools/test_data/gjoneska_goea_late_increase.py
goatools/test_data/gjoneska_goea_transient_decrease.py
goatools/test_data/gjoneska_goea_transient_increase.py
goatools/test_data/godag_timed.py
goatools/test_data/nature3102_goea.py
goatools/test_data/sorter.py
goatools/test_data/wr_subobo.py
goatools/test_data/cli/__init__.py
goatools/test_data/cli/find_enrichment_dflts.py
goatools/test_data/nbt_3102/README.md
goatools/test_data/nbt_3102/__init__.py
goatools/test_data/nbt_3102/nbt.3102-S4.xlsx
goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx
goatools/test_data/nbt_3102/nbt.3102-S6.xlsx
goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt
goatools/test_data/nbt_3102/symbol2geneid.py
goatools/test_data/sections/__init__.py
goatools/test_data/sections/data2018_07_find_enrichment.py
goatools/test_data/sections/dvk2018_genefamilyclusters.py
goatools/test_data/sections/gjoneska_pfenning.py
scripts/compare_gos.py
scripts/fetch_associations.py
scripts/find_enrichment.py
scripts/go_plot.py
scripts/map_to_slim.py
scripts/ncbi_gene_results_to_python.py
scripts/plot_go_term.py
scripts/prt_terms.py
scripts/wr_hier.py
scripts/wr_sections.py