Metadata-Version: 1.0
Name: scipion-em-empiar
Version: 3.0.5
Summary: A Scipion plugin to make depositions to EMPIAR
Home-page: https://github.com/scipion-em/scipion-em-empiar
Author: I2PC
Author-email: scipion@cnb.csic.es
License: UNKNOWN
Description: ========================
        Scipion Empiar Depositor
        ========================
        
        This project is a Scipion plugin to make depositions to https://www.ebi.ac.uk/pdbe/emdb/empiar
        
        =====
        Setup
        =====
        
        In order to install the plugin follow these instructions:
        
        1. **Install this plugin:**
        
        .. code-block::
        
            scipion installp -p scipion-em-empiar
        
        or through the **plugin manager** by launching Scipion and following **Configuration** >> **Plugins**
        
        
        Alternatively, in devel mode:
        
        
        .. code-block::
        
            git clone https://github.com/scipion-em/scipion-em-empiar.git
            scipion installp -p local/path/to/scipion-em-empiar --devel
        
        2. **Download Aspera Connect:**
        
        Go to https://www.ibm.com/aspera/connect/ and download the latest version.
        
        3. Register an account in the EMPIAR deposition and Segmentation Annotation Tool
        
        Go to https://www.ebi.ac.uk/pdbe/emdb/empiar/deposition/register/ and get an API token at **Get empiar-deposition API token** section
        
        4.  Open scipion's config file 'scipion3 config --show' and add the following variables:
        
        .. code-block::
        
            ASCP = <aspera_binary_path> (usually it is located at $HOME/.aspera/connect/bin/ascp)
            ASPERA_SCP_PASS= <aspera_shares_user_password>
            EMPIAR_TOKEN = <empiar_token>
        
Keywords: scipion empiar scipion-3.0
Platform: UNKNOWN
