.coveragerc
.gitignore
.pre-commit-config.yaml
.readthedocs.yaml
CITATION.cff
Dockerfile
LICENSE
Pipfile
README.md
pyproject.toml
.github/ISSUE_TEMPLATE/bug-report.yaml
.github/ISSUE_TEMPLATE/feature-request.yaml
.github/workflows/checks.yaml
.github/workflows/close_issue.yml
.github/workflows/pr-priority-label.yaml
.github/workflows/release.yml
.github/workflows/stale.yaml
docs/Makefile
docs/make.bat
docs/scripts/generate_normalize_figure.py
docs/source/changelog.rst
docs/source/conf.py
docs/source/contributing.rst
docs/source/index.rst
docs/source/install.rst
docs/source/license.rst
docs/source/usage.rst
docs/source/_static/documents/cgc_2023_poster.pdf
docs/source/_static/html/normalize_example.html
docs/source/_templates/module_summary.rst
docs/source/_templates/module_summary_inherited.rst
docs/source/managing_data/dynamodb.rst
docs/source/managing_data/index.rst
docs/source/managing_data/loading_and_updating_data.rst
docs/source/managing_data/postgresql.rst
docs/source/normalizing_data/index.rst
docs/source/normalizing_data/normalization.rst
docs/source/normalizing_data/sources.rst
docs/source/normalizing_data/vrs_compliance.rst
docs/source/reference/index.rst
docs/source/reference/api/gene.query.rst
docs/source/reference/api/gene.schemas.rst
docs/source/reference/api/database/gene.database.database.rst
docs/source/reference/api/database/gene.database.dynamodb.rst
docs/source/reference/api/database/gene.database.postgresql.rst
docs/source/reference/api/etl/gene.etl.base.rst
docs/source/reference/api/etl/gene.etl.ensembl.rst
docs/source/reference/api/etl/gene.etl.exceptions.rst
docs/source/reference/api/etl/gene.etl.hgnc.rst
docs/source/reference/api/etl/gene.etl.merge.rst
docs/source/reference/api/etl/gene.etl.ncbi.rst
src/gene/__init__.py
src/gene/cli.py
src/gene/main.py
src/gene/query.py
src/gene/schemas.py
src/gene/database/__init__.py
src/gene/database/database.py
src/gene/database/dynamodb.py
src/gene/database/postgresql.py
src/gene/database/postgresql/add_fkeys.sql
src/gene/database/postgresql/add_indexes.sql
src/gene/database/postgresql/create_record_lookup_view.sql
src/gene/database/postgresql/create_tables.sql
src/gene/database/postgresql/delete_normalized_concepts.sql
src/gene/database/postgresql/drop_fkeys.sql
src/gene/database/postgresql/drop_indexes.sql
src/gene/etl/__init__.py
src/gene/etl/base.py
src/gene/etl/ensembl.py
src/gene/etl/exceptions.py
src/gene/etl/hgnc.py
src/gene/etl/merge.py
src/gene/etl/ncbi.py
src/gene_normalizer.egg-info/PKG-INFO
src/gene_normalizer.egg-info/SOURCES.txt
src/gene_normalizer.egg-info/dependency_links.txt
src/gene_normalizer.egg-info/entry_points.txt
src/gene_normalizer.egg-info/requires.txt
src/gene_normalizer.egg-info/top_level.txt
tests/conftest.py
tests/unit/dynamodb_build.bash
tests/unit/test_database_and_etl.py
tests/unit/test_emit_warnings.py
tests/unit/test_endpoints.py
tests/unit/test_ensembl_source.py
tests/unit/test_hgnc_source.py
tests/unit/test_ncbi_source.py
tests/unit/test_query.py
tests/unit/test_schemas.py
tests/unit/data/etl_data/ensembl_GRCh38_113.gff
tests/unit/data/etl_data/hgnc_20241206.json
tests/unit/data/etl_data/ncbi_GRCh38.p14.gff
tests/unit/data/etl_data/ncbi_history_20241224.tsv
tests/unit/data/etl_data/ncbi_info_20241224.tsv