Metadata-Version: 2.1
Name: tns-piler
Version: 0.0.3
Summary: Tool for finding cumulative pileups
Home-page: https://github.com/TimNicholsonShaw/piler
Author: Tim Nicholson-Shaw
Author-email: timnicholsonshaw@gmail.com
License: UNKNOWN
Project-URL: Lab Website, https://labs.biology.ucsd.edu/lykkeandersen/index.html
Keywords: Sequencing,Bioinformatics
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3 :: Only
Requires-Python: >=3.6
Description-Content-Type: text/markdown
License-File: LICENSE

# Piler

## Requirements
- ``Python >= 3.6``
- ``pysam``
- ``gffuitls``

## Installation

```bash
pip install tns-piler
```

## Usage

Cumulative Pileups of particular genes
```bash
Piler -d [GFFutils formatted annotation] -t [Ensembl transcript ID] -o [Out location] [Indexed bam files]
```

## Output  
CSV with cumulative pileups for each position along the gene, no introns, first column is file name



