Metadata-Version: 2.1
Name: haptools
Version: 0.1.3
Summary: Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
Home-page: https://github.com/cast-genomics/haptools
License: MIT
Author: Arya Massarat
Requires-Python: >=3.7,<3.11
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Provides-Extra: docs
Provides-Extra: files
Provides-Extra: tests
Requires-Dist: Pgenlib (>=0.81.3) ; extra == "files"
Requires-Dist: Sphinx (>=4.3.2) ; extra == "docs"
Requires-Dist: click (>=8.0.3)
Requires-Dist: cyvcf2 (>=0.30.14)
Requires-Dist: matplotlib (>=3.5.1)
Requires-Dist: numpy (>=1.20.0)
Requires-Dist: numpydoc (>=1.1.0) ; extra == "docs"
Requires-Dist: pysam (>=0.19.0)
Requires-Dist: sphinx-autodoc-typehints (>=1.12.0) ; extra == "docs"
Requires-Dist: sphinx-click (>=3.0.2) ; extra == "docs"
Requires-Dist: sphinx-rtd-theme (>=1.0.0) ; extra == "docs"
Project-URL: Documentation, https://haptools.readthedocs.io
Project-URL: Repository, https://github.com/cast-genomics/haptools
Description-Content-Type: text/markdown

# haptools
[![pypi version](https://img.shields.io/pypi/v/haptools)](https://pypi.org/project/haptools)
[![image](https://anaconda.org/bioconda/haptools/badges/version.svg)](https://anaconda.org/bioconda/haptools)
[![license](https://img.shields.io/pypi/l/haptools)](LICENSE)
![status](https://github.com/CAST-genomics/haptools/workflows/Tests/badge.svg)

Haptools is a collection of tools for simulating and analyzing genotypes and phenotypes while taking into account haplotype information. Haptools supports fast simulation of admixed genomes (with `simgenotype`), visualization of admixture tracks (with `karyogram`), simulating haplotype- and local ancestry-specific phenotype effects (with `transform` and `simphenotype`), and computing a variety of common file operations and statistics in a haplotype-aware manner.

Homepage: [https://haptools.readthedocs.io/](https://haptools.readthedocs.io/)

Visit our homepage for installation and usage instructions.

![haptools commands](https://drive.google.com/uc?id=1c0i_Hjms7579s24zRsKp5yMs7BxNHed_)

