Metadata-Version: 2.1
Name: histocartography
Version: 0.1
Summary: Installable histocartography package.
Home-page: https://github.com/histocartography/histocartography
Author: Guillaume Jaume, Pushpak Pati, Antonio Foncubierta Rodríguez
Author-email: guillaume.jaume2@gmail.com, antonio.foncubierta@gmail.com
License: UNKNOWN
Download-URL: https://github.com/histocartography/histocartography/archive/refs/tags/v0.1-alpha3.tar.gz
Description: <p align="center">
          <img src="https://ibm.box.com/shared/static/hzutz91ez9ukpzbxk69iy5snk8ijs8p9.png" height="200">
        </p>
        
        [![Build Status](https://travis-ci.com/histocartography/histocartography.svg?branch=main)](https://travis-ci.com/histocartography/histocartography)
        
        High-level description of the library. 
        
        # Installation 
        
        ## PyPI installer
        
        `pip install histocartography`
        
        ## From sources 
        
        - Create a conda environment:
        
        ```
        conda env create -f environment.yml
        ```
        ## Tests
        
        To ensure proper installation, run unit tests as:
        
        ```sh 
        python3 -m unittest discover -v
        ```
        
        - Activate it:
        
        ```
        conda activate histocartography
        ```
        
        # Using histocartography 
        
        Example 1:
        
        Example 2:
        
        # Papers already using this library
        
        - [Hierarchical Graph Representations for Digital Pathology](https://arxiv.org/pdf/2102.11057.pdf]), Pati et al., preprint, 2021.
        - [Quantifying Explainers of Graph Neural Networks in Computational Pathology](https://arxiv.org/pdf/2011.12646.pdf),  Jaume et al., CVPR, 2021.
        
        If you use this library, please consider citing:
        
        ```
        @inproceedings{pati2021,
            title = {Hierarchical Graph Representations for Digital Pathology},
            author = {Pushpak Pati, Guillaume Jaume, Antonio Foncubierta, Florinda Feroce, Anna Maria Anniciello, Giosuè Scognamiglio, Nadia Brancati, Maryse Fiche, Estelle Dubruc, Daniel Riccio, Maurizio Di Bonito, Giuseppe De Pietro, Gerardo Botti, Jean-Philippe Thiran, Maria Frucci, Orcun Goksel, Maria Gabrani},
            booktitle = {https://arxiv.org/pdf/2102.11057},
            year = {2021}
        } 
        ```
        
        
        
Platform: UNKNOWN
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