.DS_Store
LICENSE.txt
MANIFEST.in
PKG-INFO
README.rst
distribute_setup.py
setup.py
bin/.DS_Store
bin/CpG_aggregation.py
bin/CpG_anno_position.py
bin/CpG_anno_probe.py
bin/CpG_density_gene_centered.py
bin/CpG_distrb_chrom.py
bin/CpG_distrb_gene_centered.py
bin/CpG_distrb_region.py
bin/CpG_logo.py
bin/CpG_to_gene.py
bin/beta_PCA.py
bin/beta_jitter_plot.py
bin/beta_m_conversion.py
bin/beta_profile_gene_centered.py
bin/beta_profile_region.py
bin/beta_selectNBest.py
bin/beta_stacked_barplot.py
bin/beta_stats.py
bin/beta_tSNE.py
bin/beta_topN.py
bin/beta_trichotmize.py
bin/dmc_Bayes.py
bin/dmc_bb.py
bin/dmc_fisher.py
bin/dmc_glm.py
bin/dmc_logit.py
bin/dmc_nonparametric.py
bin/dmc_ttest.py
docs/.DS_Store
docs/Makefile
docs/make.bat
docs/build/upload.sh
docs/build/doctrees/change_log.doctree
docs/build/doctrees/compare_diff_tools.doctree
docs/build/doctrees/dataset.doctree
docs/build/doctrees/environment.pickle
docs/build/doctrees/index.doctree
docs/build/doctrees/input_format.doctree
docs/build/doctrees/installation.doctree
docs/build/doctrees/intro.doctree
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docs/build/doctrees/overview.doctree
docs/build/doctrees/reference.doctree
docs/build/doctrees/usage_information.doctree
docs/build/doctrees/demo/CpG_aggregation.doctree
docs/build/doctrees/demo/CpG_anno_position.doctree
docs/build/doctrees/demo/CpG_anno_probe.doctree
docs/build/doctrees/demo/CpG_distrb_chrom.doctree
docs/build/doctrees/demo/CpG_distrb_gene_centered.doctree
docs/build/doctrees/demo/CpG_distrb_region.doctree
docs/build/doctrees/demo/CpG_logo.doctree
docs/build/doctrees/demo/CpG_to_gene.doctree
docs/build/doctrees/demo/beta_PCA.doctree
docs/build/doctrees/demo/beta_jitter_plot.doctree
docs/build/doctrees/demo/beta_m_conversion.doctree
docs/build/doctrees/demo/beta_profile_gene_centered.doctree
docs/build/doctrees/demo/beta_profile_region.doctree
docs/build/doctrees/demo/beta_stacked_barplot.doctree
docs/build/doctrees/demo/beta_stats.doctree
docs/build/doctrees/demo/beta_tSNE.doctree
docs/build/doctrees/demo/beta_topN.doctree
docs/build/doctrees/demo/beta_trichotmize.doctree
docs/build/doctrees/demo/dmc_Bayes.doctree
docs/build/doctrees/demo/dmc_bb.doctree
docs/build/doctrees/demo/dmc_fisher.doctree
docs/build/doctrees/demo/dmc_glm.doctree
docs/build/doctrees/demo/dmc_logit.doctree
docs/build/doctrees/demo/dmc_nonparametric.doctree
docs/build/doctrees/demo/dmc_ttest.doctree
docs/build/html/.buildinfo
docs/build/html/change_log.html
docs/build/html/compare_diff_tools.html
docs/build/html/dataset.html
docs/build/html/genindex.html
docs/build/html/index.html
docs/build/html/input_format.html
docs/build/html/installation.html
docs/build/html/intro.html
docs/build/html/liscense.html
docs/build/html/objects.inv
docs/build/html/overview.html
docs/build/html/reference.html
docs/build/html/search.html
docs/build/html/searchindex.js
docs/build/html/usage_information.html
docs/build/html/_images/450_CH.logo.png
docs/build/html/_images/HCV_vs_normal.PCA.png
docs/build/html/_images/HCV_vs_normal.tSNE.png
docs/build/html/_images/Jitter.png
docs/build/html/_images/M_value_eq.png
docs/build/html/_images/beta_pvalue_corr.png
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docs/build/html/_images/beta_vs_M_curve.png
docs/build/html/_images/chromDist.CpG_perMb.png
docs/build/html/_images/chromDist.CpG_percent.png
docs/build/html/_images/chromDist.CpG_total.png
docs/build/html/_images/geneDist.png
docs/build/html/_images/gene_domain.png
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docs/build/html/_sources/change_log.rst.txt
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docs/build/html/_sources/dataset.rst.txt
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docs/build/html/_sources/intro.rst.txt
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docs/build/html/_sources/usage_information.rst.txt
docs/build/html/_sources/demo/CpG_aggregation.rst.txt
docs/build/html/_sources/demo/CpG_anno_position.rst.txt
docs/build/html/_sources/demo/CpG_anno_probe.rst.txt
docs/build/html/_sources/demo/CpG_distrb_chrom.rst.txt
docs/build/html/_sources/demo/CpG_distrb_gene_centered.rst.txt
docs/build/html/_sources/demo/CpG_distrb_region.rst.txt
docs/build/html/_sources/demo/CpG_logo.rst.txt
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docs/build/html/_sources/demo/beta_PCA.rst.txt
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docs/build/html/_sources/demo/dmc_Bayes.rst.txt
docs/build/html/_sources/demo/dmc_bb.rst.txt
docs/build/html/_sources/demo/dmc_fisher.rst.txt
docs/build/html/_sources/demo/dmc_glm.rst.txt
docs/build/html/_sources/demo/dmc_logit.rst.txt
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docs/build/html/_sources/demo/dmc_ttest.rst.txt
docs/build/html/_static/450_CH.logo.png
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docs/build/html/_static/js/modernizr.min.js
docs/build/html/_static/js/theme.js
docs/build/html/demo/CpG_aggregation.html
docs/build/html/demo/CpG_anno_position.html
docs/build/html/demo/CpG_anno_probe.html
docs/build/html/demo/CpG_distrb_chrom.html
docs/build/html/demo/CpG_distrb_gene_centered.html
docs/build/html/demo/CpG_distrb_region.html
docs/build/html/demo/CpG_logo.html
docs/build/html/demo/CpG_to_gene.html
docs/build/html/demo/beta_PCA.html
docs/build/html/demo/beta_jitter_plot.html
docs/build/html/demo/beta_m_conversion.html
docs/build/html/demo/beta_profile_gene_centered.html
docs/build/html/demo/beta_profile_region.html
docs/build/html/demo/beta_stacked_barplot.html
docs/build/html/demo/beta_stats.html
docs/build/html/demo/beta_tSNE.html
docs/build/html/demo/beta_topN.html
docs/build/html/demo/beta_trichotmize.html
docs/build/html/demo/dmc_Bayes.html
docs/build/html/demo/dmc_bb.html
docs/build/html/demo/dmc_fisher.html
docs/build/html/demo/dmc_glm.html
docs/build/html/demo/dmc_logit.html
docs/build/html/demo/dmc_nonparametric.html
docs/build/html/demo/dmc_ttest.html
docs/source/.DS_Store
docs/source/change_log.rst
docs/source/compare_diff_tools.rst
docs/source/conf.py
docs/source/dataset.rst
docs/source/index.rst
docs/source/input_format.rst
docs/source/installation.rst
docs/source/liscense.rst
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docs/source/demo/CpG_distrb_chrom.rst
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docs/source/demo/CpG_logo.rst
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docs/source/demo/beta_PCA.rst
docs/source/demo/beta_jitter_plot.rst
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docs/source/demo/beta_stacked_barplot.rst
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docs/source/demo/dmc_Bayes.rst
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lib/.DS_Store
lib/CpGtools.egg-info/PKG-INFO
lib/CpGtools.egg-info/SOURCES.txt
lib/CpGtools.egg-info/dependency_links.txt
lib/CpGtools.egg-info/not-zip-safe
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lib/cpgmodule/MI.py
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lib/cpgmodule/__init__.pyc
lib/cpgmodule/cgID.py
lib/cpgmodule/extend_bed.py
lib/cpgmodule/imotif.py
lib/cpgmodule/ireader.py
lib/cpgmodule/ireader.pyc
lib/cpgmodule/padjust.py
lib/cpgmodule/region2gene.py
lib/cpgmodule/utils.py
lib/cpgmodule/utils.pyc
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lib/cpgtools.egg-info/dependency_links.txt
lib/cpgtools.egg-info/not-zip-safe
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