MANIFEST.in
pyproject.toml
setup.py
src/add_reads.smk
src/blastn.smk
src/blobtoolkit.smk
src/blobtoolkit_pipeline.py
src/blobtools.smk
src/busco.smk
src/chunk_stats.smk
src/cov_stats.smk
src/diamond.smk
src/diamond_blastp.smk
src/minimap.smk
src/view.smk
src/window_stats.smk
src/windowmasker.smk
src/blobtoolkit_pipeline.egg-info/PKG-INFO
src/blobtoolkit_pipeline.egg-info/SOURCES.txt
src/blobtoolkit_pipeline.egg-info/dependency_links.txt
src/blobtoolkit_pipeline.egg-info/entry_points.txt
src/blobtoolkit_pipeline.egg-info/not-zip-safe
src/blobtoolkit_pipeline.egg-info/requires.txt
src/blobtoolkit_pipeline.egg-info/top_level.txt
src/lib/__init__.py
src/lib/add_summary_to_metadata.py
src/lib/chunk_fasta.py
src/lib/count_busco_genes.py
src/lib/data.py
src/lib/extract_busco_genes.py
src/lib/functions.py
src/lib/generate_config.py
src/lib/generate_configs.sh
src/lib/generate_static_images.py
src/lib/lsf_wrapper.sh
src/lib/resume_pipeline.py
src/lib/run.py
src/lib/run_btk_pipeline.sh
src/lib/track_bioproject_accessions.py
src/lib/transfer_completed.py
src/lib/unchunk_blast.py
src/lib/version.py
src/lib/window_stats.py
src/rules/_transfer_dataset.smk
src/rules/add_cov_to_tsv.smk
src/rules/add_summary_to_metadata.smk
src/rules/checksum_files.smk
src/rules/chunk_fasta.smk
src/rules/chunk_fasta_by_busco.smk
src/rules/chunk_nohit_fasta.smk
src/rules/combine_stats.smk
src/rules/count_busco_genes.smk
src/rules/extract_busco_genes.smk
src/rules/extract_nohit_fasta.smk
src/rules/generate_images.smk
src/rules/generate_summary.smk
src/rules/get_chunked_stats.smk
src/rules/get_window_stats.smk
src/rules/run_bamtools_stats.smk
src/rules/run_blastn.smk
src/rules/run_blobtools_add.smk
src/rules/run_blobtools_create.smk
src/rules/run_busco5.smk
src/rules/run_diamond_blastp.smk
src/rules/run_diamond_blastx.smk
src/rules/run_minimap2_align.smk
src/rules/run_minimap2_index.smk
src/rules/run_mosdepth.smk
src/rules/run_sub_pipeline.smk
src/rules/run_windowmasker.smk
src/rules/unchunk_blastn.smk
src/rules/unchunk_blastx.smk
src/rules/unzip_assembly_fasta.smk
src/rules/validate_dataset.smk