README.md
setup.cfg
setup.py
DeepARG.egg-info/PKG-INFO
DeepARG.egg-info/SOURCES.txt
DeepARG.egg-info/dependency_links.txt
DeepARG.egg-info/entry_points.txt
DeepARG.egg-info/requires.txt
DeepARG.egg-info/top_level.txt
deeparg/__init__.py
deeparg/abn.py
deeparg/entry.py
deeparg/argdb/__init__.py
deeparg/argdb/dbGeneLength.py
deeparg/argdb/deepARG.py
deeparg/argdb/get_size.py
deeparg/argdb/make_XY.py
deeparg/argdb/model.py
deeparg/argdb/predict.py
deeparg/argdb/process.py
deeparg/argdb/process_blast.py
deeparg/argdb/train_arc.py
deeparg/argdb/train_arc_genes.py
deeparg/argdb/train_deepARG.py
deeparg/argdb/utils.py
deeparg/predict/__init__.py
deeparg/predict/bin/__init__.py
deeparg/predict/bin/deepARG.py
deeparg/predict/bin/model.py
deeparg/predict/bin/process_blast.py
deeparg/short_reads_pipeline/ValidateClass.py
deeparg/short_reads_pipeline/__init__.py
deeparg/short_reads_pipeline/short_reads_pipeline.py
deeparg/short_reads_pipeline/pipeline/__init__.py
deeparg/short_reads_pipeline/pipeline/contigsPipelineClass.py
deeparg/short_reads_pipeline/pipeline/d16spipelineClass.py
deeparg/short_reads_pipeline/pipeline/pairedEndPipelineClass.py
deeparg/short_reads_pipeline/pipeline/singleEndPipelineClass.py
deeparg/short_reads_pipeline/quantification/__init__.py
deeparg/short_reads_pipeline/quantification/normalizationClass.py
deeparg/short_reads_pipeline/quantification/quantificationClass.py
deeparg/short_reads_pipeline/tools/__init__.py
deeparg/short_reads_pipeline/tools/deepargClass.py
deeparg/short_reads_pipeline/tools/trimmomaticClass.py
deeparg/short_reads_pipeline/tools/vsearchClass.py