Metadata-Version: 2.1
Name: pax2graphml
Version: 1.1.3
Summary: A python library for large-scale regulation network analysis using BIOPAX and GRAPHML
Home-page: https://gitlab.inria.fr/fmoreews/pax2graphml
Author: FJR Moreews
Author-email: fjrmoreews@gmail.com
License: MIT
Description: # PAX2GraphML 
        
        ## Features
        
        PAX2GraphML is   dedicated to design biological reaction graph analysis softwares.
        
        The package PAX2GraphML  allows to efficiently  manipulate   BioPAX data sources transformed as GRAPHML files.
        
        It is expecially design  around the SPAIM reaction model (Substrate, Product, Activator, Inhibitor, Modulator). Among other things, it allows to  analyze the graphs, to extract sub-components and to build an influence graph.
        Input graphs are in .graphml format, assumed under the SPAIM model.
        
        
        
        
        ##### Documentation
        
        
        The package relies mainly on the python graph_tool module to extract, manipulate and save these graphs: https://graph-tool.skewed.de/static/doc/quickstart.html. 
        
        Java is as well necessary for some sub-modules, like for BIOPAX export features.
        
        the full documentation is available at  [https://fjrmoreews.github.io/pax2graphml/](https://fjrmoreews.github.io/pax2graphml/)
        
        ##### Installation
        
        We provide a easy to use docker installation and a Debian/Ubuntu installation tutorial and a jupyter lab notebook with live examples.
         
        
        The docker container provides the necessary environment to run the package (mainly, installation of python3 and graph_tool java and paxtools).
        
        See   [https://gitlab.inria.fr/fmoreews/pax2graphml](https://gitlab.inria.fr/fmoreews/pax2graphml) for full installation instructions.
        
        
        
        ### Source repository
        
        The sources are available at  [https://gitlab.inria.fr/fmoreews/pax2graphml](https://gitlab.inria.fr/fmoreews/pax2graphml)
        
        
        
Platform: Posix; MacOS X;
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.6.0
Description-Content-Type: text/markdown
Provides-Extra: testing
