Metadata-Version: 2.1
Name: sinto
Version: 0.8.3
Summary: Tools for single-cell data processing
Home-page: https://timoast.github.io/sinto/
Author: Tim Stuart
Author-email: tstuart@nygenome.org
License: MIT
Project-URL: Bug Tracker, https://github.com/timoast/sinto/issues
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Requires-Python: >=3.8
License-File: LICENSE

Sinto: single-cell analysis tools
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.. image:: https://pepy.tech/badge/sinto
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Sinto is a toolkit for processing aligned single-cell data. Sinto includes functions to:

- Subset reads from a BAM file by cell barcode
- Create a scATAC-seq fragments file from a BAM file
- Add read tags to a BAM file according to cell barcode information
- Add read groups based on read tags
- Copy or move read tags to another read tag
- Copy cell barcodes to/from read names or read tags
- Add cell barcodes to FASTQ read names

Read the documentation at https://timoast.github.io/sinto

