LICENSE
MANIFEST.in
NOTICE
README.md
setup.py
doc/html/_static/benchmark/model1-short.yaml
doc/html/_static/benchmark/model1.yaml
doc/html/_static/benchmark/model2-short.yaml
doc/html/_static/benchmark/model2.yaml
doc/html/_static/benchmark/model2b-short.yaml
doc/html/_static/benchmark/model2b.yaml
doc/html/_static/benchmark/model3-short.yaml
doc/html/_static/benchmark/model3.yaml
doc/html/_static/benchmark/model3b-short.yaml
doc/html/_static/benchmark/model3b.yaml
doc/html/_static/benchmark/model4-short.yaml
doc/html/_static/benchmark/model4.yaml
doc/html/_static/benchmark/model5-short.yaml
doc/html/_static/benchmark/model5.yaml
doc/html/_static/benchmark/model6-short.yaml
doc/html/_static/benchmark/model6.yaml
doc/html/_static/benchmark/model7-short.yaml
doc/html/_static/benchmark/model7.yaml
doc/html/_static/models/features/IBM_ABC.yaml
doc/html/_static/models/features/IBM_SEIRS.yaml
doc/html/_static/models/features/IBM_SIR.yaml
doc/html/_static/models/features/IBM_SIRS_periodic_risk.yaml
doc/html/_static/models/features/IBM_SIR_JA_demo.yaml
doc/html/_static/models/features/IBM_SIR_JA_demo_prototypes.yaml
doc/html/_static/models/features/IBM_SIR_JA_demo_random.yaml
doc/html/_static/models/features/IBM_SIR_JA_metapop.yaml
doc/html/_static/models/features/IBM_SIR_JA_metapop_data.yaml
doc/html/_static/models/features/IBM_SIR_JA_struct.yaml
doc/html/_static/models/features/IBM_SIR_age_demo.yaml
doc/html/_static/models/features/IBM_SIR_aggreg.yaml
doc/html/_static/models/features/IBM_SIR_cumul_inc.yaml
doc/html/_static/models/features/IBM_SIR_demo.yaml
doc/html/_static/models/features/IBM_SIR_struct.yaml
doc/html/_static/models/features/IBM_duration.yaml
doc/html/_static/models/features/IBM_gest.yaml
doc/html/_static/models/features/compart_ABC.yaml
doc/html/_static/models/features/compart_SEIRS.yaml
doc/html/_static/models/features/compart_SIR.yaml
doc/html/_static/models/features/compart_SIRS_periodic_risk.yaml
doc/html/_static/models/features/compart_SIR_JA_demo.yaml
doc/html/_static/models/features/compart_SIR_JA_demo_prototypes.yaml
doc/html/_static/models/features/compart_SIR_JA_demo_random.yaml
doc/html/_static/models/features/compart_SIR_JA_metapop.yaml
doc/html/_static/models/features/compart_SIR_JA_metapop_data.yaml
doc/html/_static/models/features/compart_SIR_JA_struct.yaml
doc/html/_static/models/features/compart_SIR_cumul_inc.yaml
doc/html/_static/models/features/compart_SIR_demo.yaml
doc/html/_static/models/features/compart_SIR_metapop.yaml
doc/html/_static/models/features/compart_SIR_struct.yaml
doc/html/_static/models/features/compart_duration.yaml
doc/html/_static/models/features/hybrid_ABC-old.yaml
doc/html/_static/models/features/hybrid_ABC.yaml
doc/html/_static/models/features/hybrid_ABC2.yaml
doc/html/_static/models/features/hybrid_SEIRS.yaml
doc/html/_static/models/features/hybrid_SIR.yaml
doc/html/_static/models/features/hybrid_SIRS_periodic_risk.yaml
doc/html/_static/models/features/hybrid_SIR_JA_demo.yaml
doc/html/_static/models/features/hybrid_SIR_JA_demo_prototypes.yaml
doc/html/_static/models/features/hybrid_SIR_JA_demo_random.yaml
doc/html/_static/models/features/hybrid_SIR_JA_metapop.yaml
doc/html/_static/models/features/hybrid_SIR_JA_metapop_data.yaml
doc/html/_static/models/features/hybrid_SIR_JA_struct.yaml
doc/html/_static/models/features/hybrid_SIR_age_demo.yaml
doc/html/_static/models/features/hybrid_SIR_aggreg.yaml
doc/html/_static/models/features/hybrid_SIR_cumul_inc.yaml
doc/html/_static/models/features/hybrid_SIR_demo.yaml
doc/html/_static/models/features/hybrid_SIR_lockdown.yaml
doc/html/_static/models/features/hybrid_SIR_metapop.yaml
doc/html/_static/models/features/hybrid_SIR_metapop_data.yaml
doc/html/_static/models/features/hybrid_SIR_metapop_params.yaml
doc/html/_static/models/features/hybrid_SIR_struct.yaml
doc/html/_static/models/features/hybrid_duration.yaml
doc/html/_static/models/features/hybrid_gest.yaml
doc/html/_static/models/quickstart/quickstart.yaml
doc/html/_static/models/transition/compart_SIR_JA_demo-1.1.yaml
doc/html/_static/models/transition/compart_SIR_JA_demo-1.2.yaml
doc/html/_static/models/transition/hybrid_SIR_JA_demo-1.1.yaml
doc/html/_static/models/transition/hybrid_SIR_JA_demo-1.2.yaml
models/features/IBM_ABC.yaml
models/features/IBM_SEIRS.yaml
models/features/IBM_SIR.yaml
models/features/IBM_SIRS_periodic_risk.yaml
models/features/IBM_SIR_JA_demo.yaml
models/features/IBM_SIR_JA_demo_prototypes.yaml
models/features/IBM_SIR_JA_demo_random.yaml
models/features/IBM_SIR_JA_metapop.yaml
models/features/IBM_SIR_JA_metapop_data.py
models/features/IBM_SIR_JA_metapop_data.yaml
models/features/IBM_SIR_JA_struct.yaml
models/features/IBM_SIR_age_demo.yaml
models/features/IBM_SIR_aggreg.yaml
models/features/IBM_SIR_cumul_inc.yaml
models/features/IBM_SIR_demo.yaml
models/features/IBM_duration.yaml
models/features/IBM_gest.yaml
models/features/compart_ABC.yaml
models/features/compart_SEIRS.yaml
models/features/compart_SIR.yaml
models/features/compart_SIRS_periodic_risk.yaml
models/features/compart_SIR_JA_demo.yaml
models/features/compart_SIR_JA_demo_prototypes.yaml
models/features/compart_SIR_JA_demo_random.yaml
models/features/compart_SIR_JA_metapop.yaml
models/features/compart_SIR_JA_metapop_data.py
models/features/compart_SIR_JA_metapop_data.yaml
models/features/compart_SIR_JA_struct.yaml
models/features/compart_SIR_cumul_inc.yaml
models/features/compart_SIR_demo.yaml
models/features/compart_duration.yaml
models/features/hybrid_ABC-old.yaml
models/features/hybrid_ABC.yaml
models/features/hybrid_ABC2.yaml
models/features/hybrid_SEIRS.yaml
models/features/hybrid_SIR.yaml
models/features/hybrid_SIRS_periodic_risk.yaml
models/features/hybrid_SIR_JA_demo.yaml
models/features/hybrid_SIR_JA_demo_prototypes.yaml
models/features/hybrid_SIR_JA_demo_random.yaml
models/features/hybrid_SIR_JA_metapop.yaml
models/features/hybrid_SIR_JA_metapop_data.py
models/features/hybrid_SIR_JA_metapop_data.yaml
models/features/hybrid_SIR_JA_struct.yaml
models/features/hybrid_SIR_age_demo.yaml
models/features/hybrid_SIR_aggreg.yaml
models/features/hybrid_SIR_cumul_inc.yaml
models/features/hybrid_SIR_demo.yaml
models/features/hybrid_SIR_lockdown.yaml
models/features/hybrid_SIR_metapop_params.yaml
models/features/hybrid_duration.yaml
models/features/hybrid_gest.yaml
models/features/data/initial_individuals.csv
models/features/data/moves.csv
models/features/data/pop_parameters.csv
models/features/data/pop_structure.csv
models/features/data/population_size.csv
models/features/data/test_pop.csv
models/quickstart/quickstart.yaml
src/emulsion/__init__.py
src/emulsion/__main__.py
src/emulsion/init_emulsion.py
src/emulsion.egg-info/PKG-INFO
src/emulsion.egg-info/SOURCES.txt
src/emulsion.egg-info/dependency_links.txt
src/emulsion.egg-info/entry_points.txt
src/emulsion.egg-info/requires.txt
src/emulsion.egg-info/top_level.txt
src/emulsion/agent/__init__.py
src/emulsion/agent/action.py
src/emulsion/agent/atoms.py
src/emulsion/agent/comparts.py
src/emulsion/agent/exceptions.py
src/emulsion/agent/meta.py
src/emulsion/agent/process.py
src/emulsion/agent/views.py
src/emulsion/agent/core/__init__.py
src/emulsion/agent/core/abstract_agent.py
src/emulsion/agent/core/emulsion_agent.py
src/emulsion/agent/core/groups.py
src/emulsion/agent/managers/__init__.py
src/emulsion/agent/managers/abstract_process_manager.py
src/emulsion/agent/managers/compart_process_manager.py
src/emulsion/agent/managers/functions.py
src/emulsion/agent/managers/group_manager.py
src/emulsion/agent/managers/ibm_process_manager.py
src/emulsion/agent/managers/metapop_process_manager.py
src/emulsion/agent/managers/multi_process_manager.py
src/emulsion/model/__init__.py
src/emulsion/model/emulsion_model.py
src/emulsion/model/exceptions.py
src/emulsion/model/functions.py
src/emulsion/model/state_machines.py
src/emulsion/resources/emulsion.tx
src/emulsion/scripts/emulsion-completion.sh
src/emulsion/tools/__init__.py
src/emulsion/tools/calendar.py
src/emulsion/tools/debug.py
src/emulsion/tools/functions.py
src/emulsion/tools/getters.py
src/emulsion/tools/graph.py
src/emulsion/tools/misc.py
src/emulsion/tools/parallel.py
src/emulsion/tools/plot.py
src/emulsion/tools/preprocessor.py
src/emulsion/tools/simulation.py
src/emulsion/tools/state.py
src/emulsion/tools/timing.py
src/emulsion/tools/view.py