Metadata-Version: 2.1
Name: extract-specific-lines
Version: 0.0.3
Summary: to get specific lines from the subject file which maps the query ids. Written by Guanliang MENG
Home-page: https://github.com/linzhi2013/extract_specific_lines
Author: Guanliang Meng
Author-email: linzhi2012@gmail.com
License: UNKNOWN
Description: # extract_specific_lines
        
        ## 1 Introduction
        
        `extract_specific_lines` is a tool to extract specific lines which maps the query ids (of the query file) from the subject file.
        
        ## 2 Installation
        
            pip install extract_specific_lines
        
        There will be a command `extract_specific_lines` created under the same directory as your `pip` command.
        
        ## 3 Usage
        
            usage: extract_specific_lines.py [-h] [-q <str> [<str> ...]] [-f <query file>]
                                             [-s [<subject file>]] [-s1 <pattern>]
                                             [-s2 <pattern>] [-d1 [<int>]] [-d2 [<int>]]
                                             [-o [<outfile>]] [-v] [-V] [--version]
        
            to extract specific lines from the subject file which maps the query ids.
            written by Guanliang MENG
        
            optional arguments:
              -h, --help            show this help message and exit
              -q <str> [<str> ...]  query list
              -f <query file>       query list file
              -s [<subject file>]   subject file [stdin]
              -s1 <pattern>         query file sep_pattern [\s+]
              -s2 <pattern>         subject file sep_pattern [\s+]
              -d1 [<int>]           which field in the query_file is to used? [0]
              -d2 [<int>]           which field in the subject_file is to used? [0]
              -o [<outfile>]        outfile [stdout]
              -v                    invert the output [False]
              -V                    verbose output
              --version             show program's version number and exit
              
        ## Author
        Guanliang MENG
        
        ## Citation
        Currently I have no plan to publish `extract_specific_lines`.
        
        
        
        
        
        
        
        
Platform: UNKNOWN
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Requires-Python: >=3
Description-Content-Type: text/markdown
