# Development configuration files
CLAUDE.md
meta-config.yml
_intense_backlog.md
TODO_NUMBA_CONFIG.md
TODO_DISENTANGLEMENT_TESTS.md
.claude/

# Markdown files (except README)
*.md
!README*.md
!readme*.md

# Python
__pycache__/
*.py[cod]
*$py.class
*.so
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
*.egg-info/
.installed.cfg
*.egg

# Virtual environments
venv/
ENV/
env/
.venv

# IDEs
.vscode/
.idea/
*.swp
*.swo
*~

# Testing
.tox/
.coverage
.coverage.*
.cache
.pytest_cache/
htmlcov/

# Documentation
docs/_build/
site/

# OS
.DS_Store
Thumbs.db

# Jupyter
.ipynb_checkpoints
*.ipynb_checkpoints

# Data and logs
*.log
*.pkl
*.pickle
data/
logs/
wandb/
tensorboard/
gpu/

# Temporary files
*.tmp
*.bak
temp/
archive/
deprecated/

# Coverage and debug files
coverage.json
coverage.xml
coverage_debug_*.txt
coverage_gaps_report.md
htmlcov_*/
batch_coverage_results*.json
DOC_VERIFICATION*.txt
*_REPORT.txt

# Test files in root (not in tests/ directory)
/test_*.py

# Debug and analysis artifacts in root
/debug_*.py
/check_*.py
/visualize_*.py
/analysis_*/

# All tools directory scripts
# tools/  # Commented out - CI workflows need these scripts

# Text files folder
text/

# Internal documentation
docs_internal/

# Documentation consistency cache
.doc_consistency_cache.json

# Tool-generated reports
*_report.txt

# Papers folder
papers/

# Science folder
science/
