Metadata-Version: 2.4
Name: propit
Version: 0.0.6
Summary: Glue and Grease for Proteomics Pipelines.
Author-email: Fabian Egli <fabianegli@users.noreply.github.com>
Maintainer-email: Fabian Egli <fabianegli@users.noreply.github.com>
License: GPLv3
Project-URL: bugs, https://github.com/fabianegli/propit/issues
Project-URL: changelog, https://github.com/fabianegli/propit/blob/master/changelog.md
Project-URL: homepage, https://github.com/fabianegli/propit
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: File Formats
Classifier: Environment :: Console
Classifier: Development Status :: 2 - Pre-Alpha
Requires-Python: >=3.10
Description-Content-Type: text/markdown
License-File: LICENSE
Requires-Dist: pandas
Requires-Dist: peptacular
Provides-Extra: test
Requires-Dist: coverage; extra == "test"
Requires-Dist: pytest; extra == "test"
Requires-Dist: ruff; extra == "test"
Requires-Dist: ty; extra == "test"
Requires-Dist: ipdb; extra == "test"
Provides-Extra: dev
Requires-Dist: coverage; extra == "dev"
Requires-Dist: pytest; extra == "dev"
Requires-Dist: ruff; extra == "dev"
Requires-Dist: ty; extra == "dev"
Requires-Dist: ipdb; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Dynamic: license-file

# Proteomics Pipeline Toolkit

![PyPI version](https://img.shields.io/pypi/v/propit.svg)

Glue and Grease for Proteomics Pipelines.

* PyPI package: https://pypi.org/project/propit/
* Free software: GPLv3
* Documentation: https://propit.readthedocs.io.


```
propit --help
usage: propit [-h] {percolator2flashlfq,sage2flashlfq,flashlfq2pb,comet2perc} ...

Convert Proteomics files.

positional arguments:
  {percolator2flashlfq,sage2flashlfq,flashlfq2pb,comet2perc}
    percolator2flashlfq
                        Make generic input files for FlashLFQ.
    sage2flashlfq       Make generic input files for FlashLFQ.
    flashlfq2pb         Make generic input files for ProteoBench from FlashLFQ peptides.
    comet2perc          This tool removes the deltaCn column from pin files.

options:
  -h, --help            show this help message and exit
```


## Credits

This package was created with [Cookiecutter](https://github.com/audreyfeldroy/cookiecutter) and the [audreyfeldroy/cookiecutter-pypackage](https://github.com/audreyfeldroy/cookiecutter-pypackage) project template.
