LICENSE
MANIFEST.in
README.md
pyproject.toml
setup.cfg
setup.py
src/mavis/__init__.py
src/mavis/breakpoint.py
src/mavis/config.py
src/mavis/constants.py
src/mavis/error.py
src/mavis/interval.py
src/mavis/main.py
src/mavis/overlay.py
src/mavis/py.typed
src/mavis/types.py
src/mavis/util.py
src/mavis.egg-info/PKG-INFO
src/mavis.egg-info/SOURCES.txt
src/mavis.egg-info/dependency_links.txt
src/mavis.egg-info/entry_points.txt
src/mavis.egg-info/requires.txt
src/mavis.egg-info/top_level.txt
src/mavis/annotate/__init__.py
src/mavis/annotate/annotations_schema.json
src/mavis/annotate/base.py
src/mavis/annotate/constants.py
src/mavis/annotate/file_io.py
src/mavis/annotate/fusion.py
src/mavis/annotate/genomic.py
src/mavis/annotate/main.py
src/mavis/annotate/protein.py
src/mavis/annotate/splicing.py
src/mavis/annotate/variant.py
src/mavis/bam/__init__.py
src/mavis/bam/cache.py
src/mavis/bam/cigar.py
src/mavis/bam/read.py
src/mavis/bam/stats.py
src/mavis/cluster/__init__.py
src/mavis/cluster/cluster.py
src/mavis/cluster/main.py
src/mavis/convert/__init__.py
src/mavis/convert/arriba.py
src/mavis/convert/breakdancer.py
src/mavis/convert/chimerascan.py
src/mavis/convert/cnvnator.py
src/mavis/convert/constants.py
src/mavis/convert/starfusion.py
src/mavis/convert/straglr.py
src/mavis/convert/transabyss.py
src/mavis/convert/vcf.py
src/mavis/illustrate/__init__.py
src/mavis/illustrate/constants.py
src/mavis/illustrate/diagram.py
src/mavis/illustrate/elements.py
src/mavis/illustrate/scatter.py
src/mavis/illustrate/util.py
src/mavis/pairing/__init__.py
src/mavis/pairing/constants.py
src/mavis/pairing/main.py
src/mavis/pairing/pairing.py
src/mavis/summary/__init__.py
src/mavis/summary/constants.py
src/mavis/summary/main.py
src/mavis/summary/summary.py
src/mavis/validate/__init__.py
src/mavis/validate/align.py
src/mavis/validate/assemble.py
src/mavis/validate/base.py
src/mavis/validate/blat.py
src/mavis/validate/call.py
src/mavis/validate/constants.py
src/mavis/validate/evidence.py
src/mavis/validate/gather.py
src/mavis/validate/main.py
src/tools/__init__.py
src/tools/calculate_ref_alt_counts.py
src/tools/convert_annotations_format.py
src/tools/find_repeats.py
src/tools/generate_ensembl_json.py