LICENSE
README.md
pyproject.toml
setup.cfg
setup.py
./torchtree/__init__.py
./torchtree/math.py
./torchtree/torchtree.py
./torchtree/treeregression.py
./torchtree/typing.py
./torchtree/cli/__init__.py
./torchtree/cli/advi.py
./torchtree/cli/cli.py
./torchtree/cli/evolution.py
./torchtree/cli/map.py
./torchtree/cli/priors.py
./torchtree/core/__init__.py
./torchtree/core/abstractparameter.py
./torchtree/core/classproperty_decorator.py
./torchtree/core/container.py
./torchtree/core/convex_combination.py
./torchtree/core/identifiable.py
./torchtree/core/logger.py
./torchtree/core/model.py
./torchtree/core/parameter.py
./torchtree/core/parameter_encoder.py
./torchtree/core/parametric.py
./torchtree/core/runnable.py
./torchtree/core/serializable.py
./torchtree/core/utils.py
./torchtree/core/xml.py
./torchtree/distributions/__init__.py
./torchtree/distributions/ctmc_scale.py
./torchtree/distributions/deterministic_normal.py
./torchtree/distributions/distributions.py
./torchtree/distributions/gmrf.py
./torchtree/distributions/gmrf_integrated.py
./torchtree/distributions/horseshoe.py
./torchtree/distributions/inverse_gamma.py
./torchtree/distributions/joint_distribution.py
./torchtree/distributions/log_normal.py
./torchtree/distributions/mixture.py
./torchtree/distributions/multivariate_normal.py
./torchtree/distributions/normal.py
./torchtree/distributions/one_on_x.py
./torchtree/distributions/scale_mixture.py
./torchtree/distributions/transforms.py
./torchtree/distributions/tree_prior.py
./torchtree/evolution/__init__.py
./torchtree/evolution/alignment.py
./torchtree/evolution/bdsk.py
./torchtree/evolution/branch_model.py
./torchtree/evolution/coalescent.py
./torchtree/evolution/coalescent_functions.py
./torchtree/evolution/datatype.py
./torchtree/evolution/io.py
./torchtree/evolution/poisson_tree_likelihood.py
./torchtree/evolution/rate_transform.py
./torchtree/evolution/root_transform.py
./torchtree/evolution/site_model.py
./torchtree/evolution/site_pattern.py
./torchtree/evolution/substitution_model.py
./torchtree/evolution/taxa.py
./torchtree/evolution/tree_height_transform.py
./torchtree/evolution/tree_likelihood.py
./torchtree/evolution/tree_likelihood_autograd.py
./torchtree/evolution/tree_model.py
./torchtree/evolution/tree_model_flexible.py
./torchtree/inference/__init__.py
./torchtree/inference/_nuts.py
./torchtree/inference/hmc.py
./torchtree/inference/sampler.py
./torchtree/nf/__init__.py
./torchtree/nf/energy_functions.py
./torchtree/nf/flow.py
./torchtree/nf/planar.py
./torchtree/nf/realnvp.py
./torchtree/nn/__init__.py
./torchtree/nn/module.py
./torchtree/optim/__init__.py
./torchtree/optim/convergence.py
./torchtree/optim/lr_scheduler.py
./torchtree/optim/optimizer.py
./torchtree/variational/__init__.py
./torchtree/variational/chi.py
./torchtree/variational/kl.py
./torchtree/variational/renyi.py
./torchtree/variational/utils.py
test/test_bdsky.py
test/test_brito.py
test/test_coalescent.py
test/test_ctmc_scale.py
test/test_datatype.py
test/test_distributions.py
test/test_gmrf.py
test/test_joint_distribution.py
test/test_mixture.py
test/test_model.py
test/test_multivariate_normal.py
test/test_poisson_tree_likelihood.py
test/test_site_model.py
test/test_site_pattern.py
test/test_substitution_model.py
test/test_taxa.py
test/test_tree_height_transform.py
test/test_tree_likelihood.py
test/test_tree_model.py
test/test_tree_prior.py
test/test_utils.py
torchtree.egg-info/PKG-INFO
torchtree.egg-info/SOURCES.txt
torchtree.egg-info/dependency_links.txt
torchtree.egg-info/entry_points.txt
torchtree.egg-info/requires.txt
torchtree.egg-info/top_level.txt