Metadata-Version: 2.1
Name: StringFix
Version: 0.0.9
Summary: A reference-based proteome assmebler for RNA-seq reads
Home-page: UNKNOWN
Author: Seokhyun Yoon
Author-email: syoon@dku.edu
License: UNKNOWN
Keywords: pypi StringFix
Platform: UNKNOWN
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.2
Classifier: Programming Language :: Python :: 3.3
Classifier: Programming Language :: Python :: 3.4
Classifier: Programming Language :: Python :: 3.5
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Requires-Python: >=3
License-File: LICENSE

## StringFix: Brief introduction
StringFix is a python3 toolkit for SNV detection, transcriptome and proteome assembly from RNA-Seq reads.
It takes aligned reads (in SAM or BAM), optionally with genome fasta and its associated GTF, as input(s) and outputs the following.

1. transcript expression profile in tsv format
2. SNV summary in tsv format
3. transcriptome.fasta
4. proteome.fasta

One can import the function by adding a line in your script, i.e., `import StringFix (as sf)`
See stringfix.py for example usage of the package

## Contact
Send email to syoon@dku.edu for any inquiry on the usages.



