CODE_OF_CONDUCT.md
CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
requirements.txt
setup.cfg
setup.py
ScaffoldGraph.egg-info/PKG-INFO
ScaffoldGraph.egg-info/SOURCES.txt
ScaffoldGraph.egg-info/dependency_links.txt
ScaffoldGraph.egg-info/entry_points.txt
ScaffoldGraph.egg-info/requires.txt
ScaffoldGraph.egg-info/top_level.txt
scaffoldgraph/__init__.py
scaffoldgraph/network.py
scaffoldgraph/tree.py
scaffoldgraph/analysis/__init__.py
scaffoldgraph/analysis/diversity.py
scaffoldgraph/analysis/enrichment.py
scaffoldgraph/analysis/general.py
scaffoldgraph/analysis/representation.py
scaffoldgraph/core/__init__.py
scaffoldgraph/core/fragment.py
scaffoldgraph/core/graph.py
scaffoldgraph/core/scaffold.py
scaffoldgraph/io/__init__.py
scaffoldgraph/io/dataframe.py
scaffoldgraph/io/sdf.py
scaffoldgraph/io/smiles.py
scaffoldgraph/io/supplier.py
scaffoldgraph/io/tsv.py
scaffoldgraph/prioritization/__init__.py
scaffoldgraph/prioritization/generic_rules.py
scaffoldgraph/prioritization/original_rules.py
scaffoldgraph/prioritization/prioritization_rules.py
scaffoldgraph/prioritization/prioritization_ruleset.py
scaffoldgraph/prioritization/rule_io.py
scaffoldgraph/scripts/__init__.py
scaffoldgraph/scripts/generate.py
scaffoldgraph/scripts/misc.py
scaffoldgraph/scripts/operations.py
scaffoldgraph/scripts/run.py
scaffoldgraph/utils/__init__.py
scaffoldgraph/utils/aggregate.py
scaffoldgraph/utils/bipartite.py
scaffoldgraph/utils/cache.py
scaffoldgraph/utils/logging.py
scaffoldgraph/utils/misc.py
scaffoldgraph/vis/__init__.py
scaffoldgraph/vis/base.py
scaffoldgraph/vis/utils.py
scaffoldgraph/vis/notebook/__init__.py
scaffoldgraph/vis/notebook/cytoscape.py
scaffoldgraph/vis/notebook/resources/cytoscape.json
tests/__init__.py
tests/test_network.py
tests/test_tree.py
tests/analysis/__init__.py
tests/analysis/test_enrichment.py
tests/analysis/test_general.py
tests/analysis/test_representation.py
tests/core/test_fragment.py
tests/core/test_graph.py
tests/core/test_scaffold.py
tests/data/test_smiles.smi
tests/prioritization/__init__.py
tests/prioritization/test_generic_rules.py
tests/prioritization/test_original_rules.py
tests/prioritization/test_prioritization_rules.py
tests/prioritization/test_prioritization_ruleset.py
tests/scripts/test_scripts.py
tests/utils/__init__.py
tests/utils/test_aggregate.py
tests/utils/test_bipartite.py
tests/utils/test_misc.py
tests/vis/__init__.py
tests/vis/test_notebook.py
tests/vis/test_vis_utils.py