Metadata-Version: 2.1
Name: aop2db
Version: 0.3.1
Summary: AOP2DB - Python parser for converting importing adverse outcome pathway data into a relational database.
Home-page: https://github.com/brucetony/aop2db
License: MIT
Keywords: Biomedical Database
Author: Bruce Schultz
Author-email: bruce.schultz@scai.fraunhofer.de
Maintainer: Bruce Schultz
Maintainer-email: bruce.schultz@scai.fraunhofer.de
Requires-Python: >=3.8,<4.0
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Developers
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: Click (>=8.0,<9.0)
Requires-Dist: cryptography (>=35.0.0,<36.0.0)
Requires-Dist: lxml (>=4.6.5,<5.0.0)
Requires-Dist: pandas (>=1.3.1,<2.0.0)
Requires-Dist: pymysql (>=1.0.2,<2.0.0)
Requires-Dist: requests (>=2.26.0,<3.0.0)
Requires-Dist: sqlalchemy (>=1.4.22,<2.0.0)
Requires-Dist: sqlalchemy_utils (>=0.37.8,<0.38.0)
Requires-Dist: tqdm (>=4.62.0,<5.0.0)
Requires-Dist: xmltodict (==0.12.0)
Project-URL: Documentation, https://aop2db.readthedocs.io/en/latest/
Project-URL: Issue Tracker, https://github.com/brucetony/aop2db/issues
Project-URL: Source Code, https://github.com/brucetony/aop2db
Description-Content-Type: text/x-rst

====================================================
AOP2DB |docs| |python_versions| |travis| |coverage|
====================================================

Package for compiling the adverse outcome pathway (AOP) data into a relational database. The data is publicly available at the `AOP website <https://aopwiki.org/>`_.

Installation |pypi_version| |pypi_license|
==========================================

``aop2db`` can be directly installed from PyPi with pip::

    $ pip install aop2db

Usage
=====

To load the data into a relational database::

    $ aop2db load

To set the driver of your database::

    $ aop2db conn mysql+pymysql://<user>:<password>@<server>/<database>

Disclaimer
==========
AOP2DB is a scientific software that has been developed in an academic capacity, and thus comes with no warranty or
guarantee of maintenance, support, or back-up of data.


.. |pypi_version| image:: https://img.shields.io/pypi/v/aop2db.svg
    :target: https://pypi.python.org/pypi/aop2db
    :alt: Current version on PyPI

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/aop2db.svg
    :alt: Stable Supported Python Versions

.. |travis| image:: https://app.travis-ci.com/brucetony/aop2db.svg?branch=master
    :alt: Current build status

.. |docs| image:: https://readthedocs.org/projects/aop2db/badge/?version=latest
        :target: https://readthedocs.org/projects/aop2db/badge/?version=latest
        :alt: Documentation Status

.. |pypi_license| image:: https://img.shields.io/pypi/l/aop2db.svg
    :alt: MIT

.. |coverage| image:: https://codecov.io/gh/brucetony/aop2db/branch/master/graphs/badge.svg?
    :alt: Coverage Status
