Metadata-Version: 1.1
Name: deepsignal
Version: 0.1.10
Summary: A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads
Home-page: https://github.com/bioinfomaticsCSU/deepsignal
Author: Peng Ni, Neng Huang
Author-email: 543943952@qq.com
License: GNU General Public License v3 (GPLv3)
Download-URL: https://github.com/bioinfomaticsCSU/deepsignal/archive/v0.1.10.tar.gz
Description-Content-Type: UNKNOWN
Description: deepsignal
        ==========
        
        
        Documentation
        -------------
        v0.1.10
        -------
        make sure results of each read be written together in call_mods' output
        
        v0.1.9
        ------
        enable multi-class (>=3) training/predicting,
        
        fix bug of extrating contig name from fast5s
        
        v0.1.8
        ------
        modify denoise module
        fix success_file bug
        update README
        
        v0.1.7
        ------
        Prevent Queue.qsize() from raising NotImplementedError on Mac OS X (github: vterron/lemon@9ca6b4b)
        covert raw signals to pA values before normalization in extract_feature module
        add denoise module
        add module-chosen options of model (rnn/base/cnn), re-train human model
        
        v0.1.6
        ------
        add option --positions in extract_features module,
        add option/function of binary_format feature file to speed up training
        
        v0.1.5
        ------
        normalize probs before output
        
        v0.1.4
        ------
        change the loss function to weighted_cross_entropy_with_logits,
        allow training using unbalanced samples.
        
        v0.1.3
        ------
        fix the deadlock issue in multiprocessing
        
        v0.1.2
        ------
        add MANIFEST.in file
        
        v0.1.1
        ------
        3 modules (extract, call_mods, train) supported
Keywords: methylation,nanopore,neural network
Platform: any
Classifier: Programming Language :: Python :: 3
Classifier: Development Status :: 4 - Beta
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
