.gitignore
.projectile
.readthedocs.yaml
LICENSE
MANIFEST.in
README.md
build.sh
pyproject.toml
setup.cfg
setup.py
img/logo.png
src/transmorph/__init__.py
src/transmorph/_logging.py
src/transmorph/_profiling.py
src/transmorph/_settings.py
src/transmorph.egg-info/PKG-INFO
src/transmorph.egg-info/SOURCES.txt
src/transmorph.egg-info/dependency_links.txt
src/transmorph.egg-info/requires.txt
src/transmorph.egg-info/top_level.txt
src/transmorph/datasets/__init__.py
src/transmorph/datasets/databank_api.py
src/transmorph/datasets/datasets.json
src/transmorph/datasets/datasets.py
src/transmorph/datasets/data/__init__.py
src/transmorph/datasets/data/spirals/spiralA.csv
src/transmorph/datasets/data/spirals/spiralA_labels.csv
src/transmorph/datasets/data/spirals/spiralB.csv
src/transmorph/datasets/data/spirals/spiralB_labels.csv
src/transmorph/engine/__init__.py
src/transmorph/engine/model.py
src/transmorph/engine/checking/__init__.py
src/transmorph/engine/checking/checking.py
src/transmorph/engine/checking/algorithms/__init__.py
src/transmorph/engine/checking/algorithms/lisi.py
src/transmorph/engine/checking/algorithms/neighborconservation.py
src/transmorph/engine/checking/algorithms/neighborentropy.py
src/transmorph/engine/evaluators/__init__.py
src/transmorph/engine/evaluators/matching_evaluators.py
src/transmorph/engine/layers/__init__.py
src/transmorph/engine/layers/layer.py
src/transmorph/engine/layers/layerchecking.py
src/transmorph/engine/layers/layerinput.py
src/transmorph/engine/layers/layermatching.py
src/transmorph/engine/layers/layermerging.py
src/transmorph/engine/layers/layeroutput.py
src/transmorph/engine/layers/layertransformation.py
src/transmorph/engine/matching/__init__.py
src/transmorph/engine/matching/matching.py
src/transmorph/engine/matching/algorithms/__init__.py
src/transmorph/engine/matching/algorithms/bknn.py
src/transmorph/engine/matching/algorithms/fusedgw.py
src/transmorph/engine/matching/algorithms/gw.py
src/transmorph/engine/matching/algorithms/labels.py
src/transmorph/engine/matching/algorithms/mnn.py
src/transmorph/engine/matching/algorithms/ot.py
src/transmorph/engine/merging/__init__.py
src/transmorph/engine/merging/merging.py
src/transmorph/engine/merging/algorithms/__init__.py
src/transmorph/engine/merging/algorithms/barycenter.py
src/transmorph/engine/merging/algorithms/graphembedding.py
src/transmorph/engine/merging/algorithms/linearcorrection.py
src/transmorph/engine/subsampling/__init__.py
src/transmorph/engine/subsampling/subsampling.py
src/transmorph/engine/subsampling/algorithms/__init__.py
src/transmorph/engine/subsampling/algorithms/keepall.py
src/transmorph/engine/subsampling/algorithms/vertexcover.py
src/transmorph/engine/traits/__init__.py
src/transmorph/engine/traits/cancatchchecking.py
src/transmorph/engine/traits/canlog.py
src/transmorph/engine/traits/containstransformations.py
src/transmorph/engine/traits/hasmetadata.py
src/transmorph/engine/traits/isprofilable.py
src/transmorph/engine/traits/isrepresentable.py
src/transmorph/engine/traits/issubsamplable.py
src/transmorph/engine/traits/usescommonfeatures.py
src/transmorph/engine/traits/usesmatching.py
src/transmorph/engine/traits/usesmetric.py
src/transmorph/engine/traits/usesneighbors.py
src/transmorph/engine/traits/usesreference.py
src/transmorph/engine/traits/usessamplelabels.py
src/transmorph/engine/traits/utils.py
src/transmorph/engine/transforming/__init__.py
src/transmorph/engine/transforming/transformation.py
src/transmorph/engine/transforming/algorithms/__init__.py
src/transmorph/engine/transforming/algorithms/commonfeatures.py
src/transmorph/engine/transforming/algorithms/ica.py
src/transmorph/engine/transforming/algorithms/pca.py
src/transmorph/engine/transforming/algorithms/pooling.py
src/transmorph/engine/transforming/algorithms/standardize.py
src/transmorph/models/__init__.py
src/transmorph/models/embedmnn.py
src/transmorph/models/fusedgwembedding.py
src/transmorph/models/mnncorrection.py
src/transmorph/models/transportcorrection.py
src/transmorph/stats/__init__.py
src/transmorph/stats/entropy.py
src/transmorph/stats/integration.py
src/transmorph/stats/lisi.py
src/transmorph/stats/matching.py
src/transmorph/stats/neighbors.py
src/transmorph/utils/__init__.py
src/transmorph/utils/anndata_manager.py
src/transmorph/utils/dimred.py
src/transmorph/utils/geometry.py
src/transmorph/utils/graph.py
src/transmorph/utils/matrix.py
src/transmorph/utils/misc.py
src/transmorph/utils/plotting.py