.gitignore
.readthedocs.yml
LICENSE
MANIFEST.in
MovieGUI.fig
MovieGUI.m
README.md
environment.yml
linter.sh
setup.cfg
setup.py
tooldproc.m
tox.ini
.github/ISSUE_TEMPLATE/bug_report.yml
.github/ISSUE_TEMPLATE/documentation_issue.yml
.github/ISSUE_TEMPLATE/feature_request.yml
.github/ISSUE_TEMPLATE/installation_issue.yml
.github/workflows/test_and_deploy.yml
docs/_themes
docs/api.rst
docs/conf.py
docs/data_acquisition.md
docs/index.rst
docs/inputs.rst
docs/installation.md
docs/installation.rst
docs/neural_activity_prediction_tutorial.md
docs/neural_activity_prediction_tutorial.rst
docs/outputs.rst
docs/pose_tracking_cli_tutorial.md
docs/pose_tracking_gui_tutorial.md
docs/pose_tracking_gui_tutorial.rst
docs/roi_proc.rst
docs/svd_matlab_tutorial.md
docs/svd_python_tutorial.md
facemap/.gitignore
facemap/__init__.py
facemap/__main__.py
facemap/keypoints.py
facemap/mouse.png
facemap/ops_user.npy
facemap/process.py
facemap/pupil.py
facemap/roi.py
facemap/running.py
facemap/utils.py
facemap.egg-info/PKG-INFO
facemap.egg-info/SOURCES.txt
facemap.egg-info/dependency_links.txt
facemap.egg-info/entry_points.txt
facemap.egg-info/requires.txt
facemap.egg-info/top_level.txt
facemap/.github/workflows/test_and_deploy.yml
facemap/gui/cluster.py
facemap/gui/gui.py
facemap/gui/guiparts.py
facemap/gui/help_windows.py
facemap/gui/io.py
facemap/gui/menus.py
facemap/gui/ops_user.npy
facemap/neural_prediction/keypoints_utils.py
facemap/neural_prediction/neural_activity.py
facemap/neural_prediction/neural_model.py
facemap/neural_prediction/prediction_utils.py
facemap/pose/datasets.py
facemap/pose/facemap_network.py
facemap/pose/model_loader.py
facemap/pose/model_training.py
facemap/pose/pose.py
facemap/pose/pose_gui.py
facemap/pose/pose_helper_functions.py
facemap/pose/refine_pose.py
facemap/pose/transforms.py
figs/GUIscreenshot.png
figs/encoding_model.png
figs/exsvds.png
figs/face_fast.gif
figs/facemap.gif
figs/guipostprocess.png
figs/guipostprocess_multi.png
figs/guipreprocess.png
figs/incexcareas.png
figs/mouse.png
figs/mouse_face0_keypoints.png
figs/mouse_face1_keypoints.png
figs/mouse_old.png
figs/mouse_views.png
figs/mousefacegui.png
figs/multivideo_fast.gif
figs/newscreenshot.png
figs/out.gif
figs/pupilfilter.png
figs/runterminal.png
figs/terminal.png
figs/tracker.gif
figs/videoscreenshot.png
matlab/BatchProcess_standalone.m
matlab/computeSVDmotion.m
matlab/processROIs.m
matlab/projectMasks.m
matlab/saveROI.m
matlab/subsampledMean.m
matlab/figs/PlotFrame.m
matlab/figs/PlotROI.m
matlab/figs/plotSVDmasks.m
matlab/getfiles/MFquestdlg.m
matlab/getfiles/chooseFiles.m
matlab/getfiles/findMovieFolders.m
matlab/getfiles/findallmov.m
matlab/pupil/findGaussianContour.m
matlab/pupil/fitMVGaus.m
matlab/pupil/processPupil.m
matlab/pupil/pupilplot.m
matlab/pupil/smoothPupil.m
matlab/running/processRunning.m
matlab/running/runningFilters.m
matlab/setROIs/drawROI.m
matlab/setROIs/drawSmallROI.m
matlab/setROIs/onScreenROI.m
matlab/setROIs/resetROIs.m
matlab/setROIs/resizeROIs.m
matlab/utils/gather_try.m
matlab/utils/kern.m
matlab/utils/my_conv2.m
matlab/utils/my_subplot.m
matlab/utils/normc.m
matlab/utils/redblue.m
matlab/utils/svdecon.m
notebooks/process.ipynb
notebooks/tutorial.ipynb
paper/fig1.py
paper/fig3.py
paper/fig4.py
paper/fig_utils.py
paper/kpsproc.py
paper/neuralpred.py
paper/suppfigs.py
tests/conftest.py
tests/test_import.py
tests/test_neural_prediction_output.py
tests/test_pose_estimation_output.py
tests/test_svd_output.py