Metadata-Version: 1.2
Name: scipion-em-atsas
Version: 3.1
Summary: Plugin to use ATSAS programs within the Scipion framework
Home-page: https://github.com/scipion-em/scipion-em-atsas
Author: I2PC
Author-email: scipion@cnb.csic.es
License: UNKNOWN
Project-URL: Bug Reports, https://github.com/scipion-em/scipion-em-atsas/issues
Project-URL: Source, https://github.com/scipion-em/scipion-em-atsas/
Description: ============
        ATSAS plugin
        ============
        
        This plugin provides a wrapper for `ATSAS <http://www.embl-hamburg.de/biosaxs/software.html>`_ - a program suite for small-angle scattering data analysis from biological macromolecules.
        
        .. image:: https://img.shields.io/pypi/v/scipion-em-atsas.svg
                :target: https://pypi.python.org/pypi/scipion-em-atsas
                :alt: PyPI release
        
        .. image:: https://img.shields.io/pypi/l/scipion-em-atsas.svg
                :target: https://pypi.python.org/pypi/scipion-em-atsas
                :alt: License
        
        .. image:: https://img.shields.io/pypi/pyversions/scipion-em-atsas.svg
                :target: https://pypi.python.org/pypi/scipion-em-atsas
                :alt: Supported Python versions
        
        .. image:: https://img.shields.io/sonar/quality_gate/scipion-em_scipion-em-atsas?server=https%3A%2F%2Fsonarcloud.io
                :target: https://sonarcloud.io/dashboard?id=scipion-em_scipion-em-atsas
                :alt: SonarCloud quality gate
        
        .. image:: https://img.shields.io/pypi/dm/scipion-em-atsas
                :target: https://pypi.python.org/pypi/scipion-em-atsas
                :alt: Downloads
        
        Installation
        ------------
        
        You will need to use 3.0+ version of Scipion to be able to run these protocols. To install the plugin, you have two options:
        
        a) Stable version
        
        .. code-block::
        
            scipion installp -p scipion-em-atsas
        
        b) Developer's version
        
            * download repository
        
            .. code-block::
        
                git clone -b devel https://github.com/scipion-em/scipion-em-atsas.git
        
            * install
        
            .. code-block::
        
                scipion installp -p /path/to/scipion-em-atsas --devel
        
        **Important:** ATSAS binaries is free for academic users, but you will have to register, download and install them yourself from https://www.embl-hamburg.de/biosaxs/download.html
        
        Configuration variables
        -----------------------
        
        *ATSAS_HOME*: Installation path to ATSAS. Default is *software/em/atsas-3.2.0*
        
        Supported versions
        ------------------
        
        3.0.1, 3.2.0
        
        Protocols
        ---------
        
            * convert PDB to SAXS curve
        
        References
        ----------
        
            1. Manalastas-Cantos, K., Konarev, P.V., Hajizadeh, N.R., Kikhney, A.G., Petoukhov, M.V., Molodenskiy, D.S., Panjkovich, A., Mertens, H.D.T., Gruzinov, A., Borges, C., Jeffries, C.M., Svergun, D.I., Franke, D. (2021). ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis J. Appl. Cryst. 54, 343-355
            2. Svergun, D., Barberato, C., and Koch, M. H. J. (1995). CRYSOL - a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates. Journal of Applied Crystallography, 28(6): 768–773.
        
Keywords: scipion electron-microscopy cryo-em structural-biology image-processing scipion-3.0
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Programming Language :: Python :: 3
