CONTRIBUTING.md
LICENSE
MANIFEST.in
README.md
setup.cfg
setup.py
aicssegmentation/__init__.py
aicssegmentation.egg-info/PKG-INFO
aicssegmentation.egg-info/SOURCES.txt
aicssegmentation.egg-info/dependency_links.txt
aicssegmentation.egg-info/entry_points.txt
aicssegmentation.egg-info/not-zip-safe
aicssegmentation.egg-info/requires.txt
aicssegmentation.egg-info/top_level.txt
aicssegmentation/bin/__init__.py
aicssegmentation/bin/batch_processing.py
aicssegmentation/core/MO_threshold.py
aicssegmentation/core/__init__.py
aicssegmentation/core/hessian.py
aicssegmentation/core/output_utils.py
aicssegmentation/core/pre_processing_utils.py
aicssegmentation/core/seg_dot.py
aicssegmentation/core/utils.py
aicssegmentation/core/vessel.py
aicssegmentation/core/visual.py
aicssegmentation/structure_wrapper/__init__.py
aicssegmentation/structure_wrapper/seg_actb.py
aicssegmentation/structure_wrapper/seg_actn1.py
aicssegmentation/structure_wrapper/seg_atp2a2.py
aicssegmentation/structure_wrapper/seg_cardio_actn2.py
aicssegmentation/structure_wrapper/seg_cardio_atp2a2.py
aicssegmentation/structure_wrapper/seg_cardio_fbl.py
aicssegmentation/structure_wrapper/seg_cardio_fbl_100x.py
aicssegmentation/structure_wrapper/seg_cardio_myl7.py
aicssegmentation/structure_wrapper/seg_cardio_npm1.py
aicssegmentation/structure_wrapper/seg_cardio_npm1_100x.py
aicssegmentation/structure_wrapper/seg_cardio_tnni1.py
aicssegmentation/structure_wrapper/seg_cardio_ttn.py
aicssegmentation/structure_wrapper/seg_cetn2.py
aicssegmentation/structure_wrapper/seg_ctnnb1.py
aicssegmentation/structure_wrapper/seg_drug_npm1.py
aicssegmentation/structure_wrapper/seg_dsp.py
aicssegmentation/structure_wrapper/seg_fbl.py
aicssegmentation/structure_wrapper/seg_fbl_labelfree_4dn.py
aicssegmentation/structure_wrapper/seg_gja1.py
aicssegmentation/structure_wrapper/seg_h2b.py
aicssegmentation/structure_wrapper/seg_lamp1.py
aicssegmentation/structure_wrapper/seg_lmnb1_interphase.py
aicssegmentation/structure_wrapper/seg_lmnb1_mitotic.py
aicssegmentation/structure_wrapper/seg_myh10.py
aicssegmentation/structure_wrapper/seg_npm1.py
aicssegmentation/structure_wrapper/seg_npm1_SR.py
aicssegmentation/structure_wrapper/seg_npm_labelfree_4dn.py
aicssegmentation/structure_wrapper/seg_nup153.py
aicssegmentation/structure_wrapper/seg_pxn.py
aicssegmentation/structure_wrapper/seg_rab5a.py
aicssegmentation/structure_wrapper/seg_sec61b.py
aicssegmentation/structure_wrapper/seg_sec61b_dual.py
aicssegmentation/structure_wrapper/seg_slc25a17.py
aicssegmentation/structure_wrapper/seg_smc1a.py
aicssegmentation/structure_wrapper/seg_son.py
aicssegmentation/structure_wrapper/seg_st6gal1.py
aicssegmentation/structure_wrapper/seg_template.py
aicssegmentation/structure_wrapper/seg_tjp1.py
aicssegmentation/structure_wrapper/seg_tomm20.py
aicssegmentation/structure_wrapper/seg_tuba1b.py
aicssegmentation/structure_wrapper/seg_ubtf.py
aicssegmentation/structure_wrapper/structure_segmenter.py
docs/Makefile
docs/conf.py
docs/contributing.rst
docs/doc.rst
docs/full.jpg
docs/full_mem.jpg
docs/full_str.jpg
docs/index.rst
docs/installation.rst
docs/make.bat
docs/rab5a_raw.jpg
docs/step1.jpg
docs/step2.jpg
docs/step3_p1.jpg
docs/step3_p2.jpg